Bioconductor Annotationhub

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 8 months ago by shepherl 4.1k • written 3.2 years ago by jon.klonowski ▴ 40

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8.1k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 10 months ago by Daniele • 0 • written 6.3 years ago by Guido Hooiveld ★ 4.1k

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7.6k

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BiocFileCache AnnotationHub ExperimentHub

17 months ago • updated 11 months ago shepherl 4.1k

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1.9k

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AnnotationDbi AnnotationHub Annotation AnnotationForge

5 months ago KABILAN • 0

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1.5k

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AnnotationHub ExperimentHub

updated 9 months ago by shepherl 4.1k • written 9 months ago by Mishaal Irfan • 0

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1.3k

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AnnotationHub BiocFileCache

9 months ago Lluís Revilla Sancho ▴ 760

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1.3k

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annotation AnnotationHub

written 7.6 years ago by genprabir106 • 0

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1.2k

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 11 months ago by Tim Peters ▴ 230 • written 11 months ago by s.malik • 0

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1.0k

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AnnotationHub AnnotationDbi AnnotationForge

7 months ago Anna • 0

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801

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signac AnnotationHub

written 16 days ago by AB ▴ 110

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468

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AnnotationHub ExperimentHub

updated 10 months ago by James W. MacDonald 68k • written 10 months ago by Tim Barry • 0

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380

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AnnotationHub ExperimentHub

9 months ago shepherl 4.1k

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225

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AnnotationHub GOSemSim rrvgo

4 months ago daccar98 • 0

13 results • Page 1 of 1

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Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k

Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …

Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0

Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge

Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0

Thank you for your reply James. I was worried that it was my mistake.

Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Votes

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

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Supporter to bhanu.chandra1 • 0