Bioconductor Annotationhub

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5.4k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 12 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

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5.6k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 5 weeks ago by shepherl 3.8k • written 2.2 years ago by jon.klonowski ▴ 40

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270

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 5 days ago by Tim Peters ▴ 170 • written 14 days ago by s.malik • 0

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4.3k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 4 months ago by James W. MacDonald 65k • written 16 months ago by Manmohit ▴ 10

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536

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tximeta AnnotationHub AnnotationHubData

6 months ago Thon • 0

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1.1k

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clusterProfiler Annotationhub

updated 5 months ago by Guido Hooiveld ★ 3.9k • written 5 months ago by BS • 0

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4.4k

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BiocFileCache AnnotationHub ExperimentHub

updated 5 weeks ago by Melissa • 0 • written 5 months ago by shepherl 3.8k

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309

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 6 weeks ago by Michael Love 41k • written 6 weeks ago by Filipe • 0

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 10 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

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143

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annotatr AnnotationHub

11 weeks ago hayleyw • 0

10 results • Page 1 of 1

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Comment: DEG with low counts by Rajat • 0

Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…

Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k

To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…

Answer: flowStats Search Error by shepherl 3.8k

We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.

Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30

Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…

Votes

Answer: Light difference when using coef vs omit a group when compare 3 groups.

C: Add new columns to DESeqResults from text file by matching rownames.

Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

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