Bioconductor Annotationhub

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1.3k

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AnnotationHub OrgDb snapshotDate

updated 10 months ago by shepherl 3.5k • written 3.0 years ago by Jenny Drnevich ★ 2.0k

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13k

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AnnotationHub dplyr

updated 10 months ago by SmallChess ▴ 10 • written 2.6 years ago by georgia.katsoula ▴ 40

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3.7k

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AnnotationHub AnnotationDbi AnnotationForge pathview

6.3 years ago • updated 9 months ago Jenny Drnevich ★ 2.0k

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2.8k

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AnnotationHub biomaRt

updated 9 months ago by alvea2008667 • 0 • written 2.2 years ago by rohitsatyam102 ▴ 20

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703

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 5 months ago by James W. MacDonald 63k • written 5 months ago by Manmohit • 0

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501

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AnnotationHub org.Hs.eg.db ensembldb

10 months ago • updated 9 months ago sandmann.t ▴ 70

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358

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BSgenome.Hsapiens.UCSC.hg19 rtracklayer AnnotationHub

9 months ago • updated 8 months ago Lenny186 • 0

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2.7k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 7 months ago by Johannes Rainer ★ 2.0k • written 4.5 years ago by Guido Hooiveld ★ 3.6k

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248

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metaboliteIDmapping AnnotationHub multiGSEA

4 months ago • updated 3 months ago Thomas • 0

9 results • Page 1 of 1

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Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

@gordonsmyth thank you, yes, please find the targets frame below. Basically, I want to create a design matrix and binarize by 0 and 1 to be…

Comment: WGCNA: many over and under-expressed features in modules of a signed network by andres.firrincieli ▴ 50

answered in Biostars: https://www.biostars.org/p/9564943/

Comment: Multitasking and Rbwa by Jean-Philippe Fortin • 0

Indeed, one can pass additional arguments to the `bwa_aln` function in `Rbwa`: bwa_aln(type="single", index_prefix=index_pr…

Comment: biomaRt error: database disk image is malformed by Emile • 0

UNBORKING the bioMaRt cache `biomaRt::biomartCacheClear()` also fixes the troubles with PANTHER.db installation which have also something t…

Answer: Proteomics data with NA values by Laurent Gatto 1.6k

- First, you need to assess how many missing values you have. - I would recommend not to impute your data by 0 (or any arbitrary small …

Votes

Answer: Question on constructing design matrix and defining contrasts for analysis

WGCNA: many over and under-expressed features in modules of a signed network

Comment: WGCNA: many over and under-expressed features in modules of a signed network

Answer: DESeq2 or edgeR for Presence and Absence of Proteins

Answer: Normalized counts from LRT or Wald test?

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Teacher to James W. MacDonald 63k