Bioconductor BigWig

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2.4k

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DESeq2 edgeR bigwig limma

3.0 years ago • updated 2.7 years ago Bogdan ▴ 670

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2.7k

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bedgraph wiggleplotr bigwig wig

updated 3.1 years ago by complaintguide • 0 • written 3.1 years ago by Bogdan ▴ 670

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2.0k

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bigWig RNASeqData

3.7 years ago bas_work ▴ 30

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2.6k

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software error BigWig import windows

5.5 years ago lsilva.m • 0

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2.7k

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wiggleplotr bigwig coverage ngs

updated 8.0 years ago by kaur.alasoo ▴ 30 • written 8.0 years ago by borgmichael • 0

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4.1k

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bigwig rtracklayer import granges grangeslist

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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rtracklayer bigwig import

updated 8.9 years ago by Michael Lawrence ★ 11k • written 8.9 years ago by zx8754 ▴ 10

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1.8k

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bigwig rtracklayer export.bw

updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by story.benjamin ▴ 20

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3.0k

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rtracklayer bigwig

updated 9.7 years ago by laurent.lacroix ▴ 30 • written 9.7 years ago by koneill ▴ 30

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1.5k

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rtracklayer BigWig

updated 9.9 years ago by Michael Lawrence ★ 11k • written 9.9 years ago by dborgesrmit • 0

10 results • Page 1 of 1

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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