Bioconductor BigWig

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2.2k

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DESeq2 edgeR bigwig limma

2.5 years ago • updated 2.2 years ago Bogdan ▴ 670

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2.5k

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bedgraph wiggleplotr bigwig wig

updated 2.6 years ago by complaintguide • 0 • written 2.6 years ago by Bogdan ▴ 670

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1.9k

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bigWig RNASeqData

3.2 years ago • updated 3.1 years ago bas_work ▴ 30

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2.3k

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software error BigWig import windows

5.0 years ago lsilva.m • 0

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2.4k

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wiggleplotr bigwig coverage ngs

updated 7.5 years ago by kaur.alasoo ▴ 30 • written 7.5 years ago by borgmichael • 0

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3.7k

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bigwig rtracklayer import granges grangeslist

updated 7.7 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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rtracklayer bigwig import

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by zx8754 ▴ 10

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1.7k

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bigwig rtracklayer export.bw

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by story.benjamin ▴ 20

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2.8k

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rtracklayer bigwig

updated 9.2 years ago by laurent.lacroix ▴ 30 • written 9.2 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.4 years ago by Michael Lawrence ★ 11k • written 9.4 years ago by dborgesrmit • 0

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Comment: single-cells RNA-seq analysis by MAST with unbalanced group size by achoppe ▴ 10

Hello! I also have compared uneven groups of cells - 517 cells in one group and 26 in the other. I am wondering if you know any published …

Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0

Thanks, I figured it out.

Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati by Mei • 0

I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…

Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0

Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

Votes

A: single-cells RNA-seq analysis by MAST with unbalanced group size

Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

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