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BigWig
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0
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1
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2.4k
views
bigwig to counts
DESeq2
edgeR
bigwig
limma
3.0 years ago • updated 2.7 years ago
Bogdan
▴ 670
0
votes
2
replies
2.7k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 3.1 years ago by
complaintguide
• 0 • written 3.1 years ago by
Bogdan
▴ 670
0
votes
1
reply
2.0k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
3.7 years ago
bas_work
▴ 30
0
votes
5
replies
2.6k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
5.5 years ago
lsilva.m
• 0
0
votes
1
reply
2.7k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 8.0 years ago by
kaur.alasoo
▴ 30 • written 8.0 years ago by
borgmichael
• 0
3
votes
15
replies
4.1k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 8.2 years ago by
Michael Lawrence
★ 11k • written 8.2 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.4k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 8.9 years ago by
Michael Lawrence
★ 11k • written 8.9 years ago by
zx8754
▴ 10
2
votes
3
replies
1.8k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 9.0 years ago by
Michael Lawrence
★ 11k • written 9.0 years ago by
story.benjamin
▴ 20
3
votes
9
replies
3.0k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 9.7 years ago by
laurent.lacroix
▴ 30 • written 9.7 years ago by
koneill
▴ 30
0
votes
2
replies
1.5k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 9.9 years ago by
Michael Lawrence
★ 11k • written 9.9 years ago by
dborgesrmit
• 0
10 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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