Bioconductor BigWig

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2.4k

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DESeq2 edgeR bigwig limma

2.9 years ago • updated 2.6 years ago Bogdan ▴ 670

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2.7k

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bedgraph wiggleplotr bigwig wig

updated 3.0 years ago by complaintguide • 0 • written 3.0 years ago by Bogdan ▴ 670

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2.0k

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bigWig RNASeqData

3.6 years ago bas_work ▴ 30

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2.5k

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software error BigWig import windows

5.5 years ago • updated 5.4 years ago lsilva.m • 0

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2.6k

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wiggleplotr bigwig coverage ngs

updated 7.9 years ago by kaur.alasoo ▴ 30 • written 7.9 years ago by borgmichael • 0

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4.0k

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bigwig rtracklayer import granges grangeslist

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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rtracklayer bigwig import

updated 8.8 years ago by Michael Lawrence ★ 11k • written 8.8 years ago by zx8754 ▴ 10

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1.8k

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bigwig rtracklayer export.bw

updated 8.9 years ago by Michael Lawrence ★ 11k • written 8.9 years ago by story.benjamin ▴ 20

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rtracklayer bigwig

updated 9.6 years ago by laurent.lacroix ▴ 30 • written 9.6 years ago by koneill ▴ 30

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1.5k

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rtracklayer BigWig

updated 9.8 years ago by Michael Lawrence ★ 11k • written 9.8 years ago by dborgesrmit • 0

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Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Votes

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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Popular Question to Assa Yeroslaviz ★ 1.5k