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BigWig
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0
votes
1
reply
2.0k
views
bigwig to counts
DESeq2
edgeR
bigwig
limma
2.3 years ago • updated 2.1 years ago
Bogdan
▴ 670
0
votes
2
replies
2.3k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 2.4 years ago by
complaintguide
• 0 • written 2.5 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.8k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
3.0 years ago
bas_work
▴ 30
0
votes
5
replies
2.2k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
4.9 years ago
lsilva.m
• 0
0
votes
1
reply
2.3k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 7.4 years ago by
kaur.alasoo
▴ 30 • written 7.4 years ago by
borgmichael
• 0
3
votes
15
replies
3.6k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.4k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
zx8754
▴ 10
2
votes
3
replies
1.6k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
story.benjamin
▴ 20
3
votes
9
replies
2.7k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 9.0 years ago by
laurent.lacroix
▴ 30 • written 9.1 years ago by
koneill
▴ 30
0
votes
2
replies
1.4k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 9.2 years ago by
Michael Lawrence
★ 11k • written 9.2 years ago by
dborgesrmit
• 0
10 results • Page
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Replies
Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Comment: For some reason I can't update BiocManager to 3.20
by
James W. MacDonald
68k
Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …
Comment: p-value the same for different contrasts DESeq2
by
caroline.zanchi
• 0
It would be great if it were possible to do something similar using GlmGamPoi !
Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Votes
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
A: Rtracklayer fails to export TxDb as GFF3 without CDS
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