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BigWig
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0
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1
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2.0k
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bigwig to counts
DESeq2
edgeR
bigwig
limma
2.3 years ago • updated 2.1 years ago
Bogdan
▴ 670
0
votes
2
replies
2.3k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 2.4 years ago by
complaintguide
• 0 • written 2.5 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.8k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
3.0 years ago
bas_work
▴ 30
0
votes
5
replies
2.2k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
4.9 years ago
lsilva.m
• 0
0
votes
1
reply
2.3k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 7.4 years ago by
kaur.alasoo
▴ 30 • written 7.4 years ago by
borgmichael
• 0
3
votes
15
replies
3.6k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.4k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
zx8754
▴ 10
2
votes
3
replies
1.6k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
story.benjamin
▴ 20
3
votes
9
replies
2.7k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 9.0 years ago by
laurent.lacroix
▴ 30 • written 9.0 years ago by
koneill
▴ 30
0
votes
2
replies
1.4k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 9.2 years ago by
Michael Lawrence
★ 11k • written 9.2 years ago by
dborgesrmit
• 0
10 results • Page
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Comment: WGCNA coupled with differential expression analysis: question about baseline mod
by
hetaf16210
• 0
@[slope][1] If feasible, consider conducting both analyses. Start with a pooled analysis to identify broad patterns, then conduct separate …
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
980linnet
• 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package
by
PW
• 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
Guilherme
• 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp
by
Ian D.
▴ 70
Please can you comment on this @rory.
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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