Bioconductor BigWig

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1.9k

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DESeq2 edgeR bigwig limma

2.2 years ago • updated 23 months ago Bogdan ▴ 670

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2.2k

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bedgraph wiggleplotr bigwig wig

updated 2.3 years ago by complaintguide • 0 • written 2.3 years ago by Bogdan ▴ 670

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1.7k

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bigWig RNASeqData

2.9 years ago bas_work ▴ 30

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2.1k

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software error BigWig import windows

4.7 years ago lsilva.m • 0

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2.2k

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wiggleplotr bigwig coverage ngs

updated 7.2 years ago by kaur.alasoo ▴ 30 • written 7.2 years ago by borgmichael • 0

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3.5k

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bigwig rtracklayer import granges grangeslist

updated 7.4 years ago by Michael Lawrence ★ 11k • written 7.4 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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rtracklayer bigwig import

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by zx8754 ▴ 10

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1.6k

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bigwig rtracklayer export.bw

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by story.benjamin ▴ 20

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2.6k

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rtracklayer bigwig

updated 8.9 years ago by laurent.lacroix ▴ 30 • written 8.9 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by dborgesrmit • 0

10 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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