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BiocStyle
•
reset
10
votes
3
replies
3.1k
views
News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
6.7 years ago
Andrzej Oleś
▴ 750
7
votes
6
replies
1.4k
views
BiocStyle::html_document does not render Glimma plots
Glimma
BiocStyle
updated 21 months ago by
Mike Smith
★ 6.5k • written 21 months ago by
neilzhao
▴ 30
7
votes
2
replies
1.3k
views
Duplicated author affiliations in BiocStyle-based HTML document
biocstyle
vignette
updated 6.8 years ago by
Andrzej Oleś
▴ 750 • written 6.8 years ago by
Aaron Lun
★ 28k
6
votes
1
reply
3.2k
views
Tutorial:
BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle
Rmarkdown
Tutorial
6.8 years ago
Wolfgang Huber
★ 13k
5
votes
3
replies
1.5k
views
Using BiocStyle with plotly
biocstyle
plotly
ggplot2
updated 6.8 years ago by
Andrzej Oleś
▴ 750 • written 6.8 years ago by
Lluís Revilla Sancho
▴ 730
3
votes
2
replies
2.9k
views
Error building R Markdown v2 document
biocstyle
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
kevin.rue
▴ 350
2
votes
6
replies
1.6k
views
BiocStyle header specification
biocstyle
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
ioannis.vardaxis
▴ 30
2
votes
2
replies
751
views
Vignette output - BiocSytle::html_document
BiocStyle
2.6 years ago
ullrich
▴ 20
2
votes
1
reply
1.1k
views
parnotes rev. 2 breaks Bioconductor LATEX Style 2.0
biocstyle
updated 7.8 years ago by
Andrzej Oleś
▴ 750 • written 7.8 years ago by
kevin.rue
▴ 350
2
votes
2
replies
1.7k
views
floating toc with BiocStyle
BiocStyle
updated 9.1 years ago by
Andrzej Oleś
▴ 750 • written 9.1 years ago by
Guangchuang Yu
★ 1.2k
2
votes
4
replies
622
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 5 months ago by
shepherl
3.9k • written 5 months ago by
lavanilla44
• 0
1
vote
4
replies
4.6k
views
Unable to install BiocStyle: not available (for R version 3.5.0)
package
not available (for R version 3.5.0)
BiocStyle
updated 5.9 years ago by
Mike Smith
★ 6.5k • written 5.9 years ago by
nereidaramirez
• 0
1
vote
12
replies
3.0k
views
Error occurred, creating Vignette in LateX style 2.0
biocstyle
vignettes
build/check error
latex
updated 7.4 years ago by
Andrzej Oleś
▴ 750 • written 7.4 years ago by
Mattia
▴ 10
1
vote
1
reply
789
views
BiocStyle not working
BiocStyle
updated 3.6 years ago by
Mike Smith
★ 6.5k • written 3.6 years ago by
federico.nichetti
▴ 10
0
votes
3
replies
1.8k
views
no floating figures with biocstyle
biocstyle
float
updated 6.6 years ago by
Andrzej Oleś
▴ 750 • written 6.6 years ago by
Lescai, Francesco
▴ 380
0
votes
1
reply
999
views
Latex error when using BiocStyle
BiocStyle
latex
3.9 years ago
Freek Manders
• 0
16 results • Page
1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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