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News: EuroBioC2025: Abstract Submissions Open!
EuroBioC2025 Community Conference Bioconductor
4 weeks ago Maria Doyle ▴ 100
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3
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987
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News: EuroBioC2023 abstract submission is open!
presentation EuroBioC2023 Conference community Bioconductor
updated 17 days ago by • 0 • written 2.1 years ago by ▴ 100
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3
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412
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batch effect removal for agilent microarray data
" "Bioconductor" Bioconductor
4 weeks ago gaye.yilmaz • 0
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137
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Job: Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
5 weeks ago Wolfgang Huber ★ 13k
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5
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721
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For some reason I can't update BiocManager to 3.20
Bioconductor
updated 4 weeks ago by 4.1k • written 5 weeks ago by • 0
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79
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News: GBCC2025 Abstract Submissions & Registration Now Open!
Community Conference GBCC2025 Bioconductor
5 weeks ago Maria Doyle ▴ 100
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89
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News: Announcing the GBCC2025 Logo Design Winner!
Community Conference GBCC2025 Bioconductor
7 weeks ago Maria Doyle ▴ 100
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219
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News: Bioconductor Course, Kenya 2025: Applications Open!
Events Community Training Africa Bioconductor
7 weeks ago Maria Doyle ▴ 100
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1.3k
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
written 23 months ago by ▴ 100
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5
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1.3k
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
updated 12 weeks ago by • 0 • written 13 months ago by ▴ 100
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2
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365
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Build error on kunpeng2 Linux aarch64
Bioconductor
updated 11 weeks ago by • 0 • written 3 months ago by • 0
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414
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bioconductor packages on bioconda
Bioconductor
updated 3 months ago by 68k • written 3 months ago by • 0
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604
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Allele frequencies for ALL alleles of one SNP ?
Bioconductor
4 months ago Abiologist • 0
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2.0k
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Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 4 months ago by 4.1k • written 2.1 years ago by ▴ 50
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738
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News: Bioconductor 3.20 is Released!
Bioconductor Release Software
4 months ago shepherl 4.1k
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274
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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
4 months ago Maria Doyle ▴ 100
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816
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Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 5 months ago by 68k • written 5 months ago by • 0
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282
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News: List of Deprecated Packages for Bioc3.20
Devel Bioconductor Release
5 months ago shepherl 4.1k
1
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2
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713
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 5 months ago by 43k • written 6 months ago by ▴ 10
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289
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
5 months ago Maria Doyle ▴ 100
2
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1.3k
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Can't post a question?
Bioconductor
updated 9 days ago by • 0 • written 5 months ago by • 0
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508
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How to read OSCA book?
BIOCON OSCA Bioconductor
6 months ago zr • 0
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504
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
6 months ago katja.danielzik • 0
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635
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concentration tables suitable as input for new packages?
Bioconductor
written 6 months ago by • 0
2
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641
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
6 months ago Maria Doyle ▴ 100
0
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5
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1.0k
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ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 6 months ago by ▴ 760 • written 6 months ago by • 0
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980
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
written 6 months ago by ▴ 100
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1
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1.3k
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Unable to install/use limma
limma Bioconductor
updated 6 months ago by 68k • written 6 months ago by • 0
1
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472
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Review process for delivering R packages
Bioconductor
6 months ago XFWu • 0
0
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486
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
6 months ago Maria Doyle ▴ 100
1
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3
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1.1k
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 7 months ago by • 0
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450
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 6 months ago by ▴ 10 • written 7 months ago by ▴ 180
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339
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
7 months ago Maria Doyle ▴ 100
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399
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
7 months ago Maria Doyle ▴ 100
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584
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Bioconductor Submission question
Bioconductor
7 months ago XFWu • 0
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329
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
7 months ago shepherl 4.1k
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339
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
7 months ago Maria Doyle ▴ 100
0
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4
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877
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featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
8 months ago • updated 7 months ago Jessica • 0
1
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616
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News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
7 months ago shepherl 4.1k
0
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2
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837
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Installing Bioconductor
Bioconductor
updated 8 months ago by ▴ 760 • written 8 months ago by • 0
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377
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
8 months ago Maria Doyle ▴ 100
0
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368
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
8 months ago Maria Doyle ▴ 100
0
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0
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446
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Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
8 months ago devarti.mahakalkar • 0
0
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3
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658
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How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
8 months ago Abiologist • 0
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2
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5.2k
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Unable to install the package "tissuesGeneExpression"
bioconductor
updated 8 months ago by • 0 • written 7.7 years ago by ▴ 10
0
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1
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511
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BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 8 months ago by 68k • written 9 months ago by • 0
4
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2
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1.1k
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Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
9 months ago Rachael • 0
1
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5
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2.2k
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Issues with installing Bioconductor packages (eg GEOquery)
GEOquery Bioconductor
updated 9 months ago by ★ 4.7k • written 9 months ago by • 0
0
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1
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395
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How to access the Bioconductor in Windows
Bioconductor
updated 9 months ago by ★ 4.7k • written 9 months ago by • 0
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0
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346
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EuroBioC2024 Registration is Open!
Community Conference Bioconductor EuroBioC2024
9 months ago Maria Doyle ▴ 100
50 results • Page 1 of 1
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Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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