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Bioconductor
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140
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DESeq2 design for haplotype MPRA
Bioconductor
5 days ago
Rita
• 0
0
votes
3
replies
146
views
"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
Bioconductor
6 days ago • updated 5 days ago
ubjw24
• 0
0
votes
3
replies
226
views
NA values for DESeq2 p-values and adjusted p-values using large sample sizes
Bioconductor
16 days ago • updated 4 days ago
Gabriel
• 0
0
votes
0
replies
57
views
Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
12 days ago
acharyapratiksha24
• 0
0
votes
1
reply
80
views
Gatins Set error
flowCore
Bioconductor
updated 16 days ago by
James W. MacDonald
68k • written 16 days ago by
yoav.lubelsky
• 0
0
votes
1
reply
72
views
Job:
Senior Teaching Fellow (MSc Computational Biomedicine)
Bioconductor
written 16 days ago by
s.samarajiwa
• 0
0
votes
0
replies
48
views
What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
17 days ago
Matthew Thornton
▴ 380
0
votes
0
replies
95
views
News:
Bioconductor 3.22 Release Schedule
Devel
Release
Bioconductor
4 weeks ago • updated 17 days ago
shepherl
4.2k
1
vote
1
reply
146
views
incomplete imputation of missing values with LEA impute() function
Bioconductor
LEA
18 days ago
nadia
• 0
1
vote
1
reply
213
views
Streamlining the computing time for MiloDE p-value correction in large dataset?
SingleCellExperiment
edgeR
miloR
Bioconductor
updated 15 days ago by
ATpoint
★ 5.0k • written 19 days ago by
Joseph
• 0
0
votes
0
replies
57
views
featureCounts -L: high unassigned:mapq fraction
Bioconductor
updated 18 days ago by
James W. MacDonald
68k • written 19 days ago by
sikora
• 0
1
vote
2
replies
224
views
Error Loading Experiment from SimBenchData Package
Bioconductor
23 days ago • updated 13 days ago
ksankaran
• 0
0
votes
7
replies
1.9k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
written 2.6 years ago by
Maria Doyle
▴ 100
0
votes
3
replies
245
views
Sharing a collection of datasets in ExperimentHub
Bioconductor
updated 19 days ago by
Aaron Lun
★ 29k • written 27 days ago by
Stephen Piccolo
▴ 600
0
votes
0
replies
138
views
DESeq2 for candidate gene analysis
Bioconductor
4 weeks ago
piffelpaff
• 0
0
votes
1
reply
98
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor
SpliceWiz
4 weeks ago • updated 26 days ago
jalte.jelsing
• 0
0
votes
0
replies
59
views
Problem with the TMB plot
Bioconductor
4 weeks ago
nayanajose
• 0
0
votes
0
replies
101
views
After running samtools, the featureCounts command crashed.
RNASeqData
Bioconductor
RNASeq
updated 9 days ago by
Michael Love
43k • written 4 weeks ago by
Rui
• 0
0
votes
6
replies
345
views
GO.db and others package Download failure
GO.db
Bioconductor
updated 4 weeks ago by
James W. MacDonald
68k • written 4 weeks ago by
Skyler
• 0
0
votes
0
replies
75
views
Job:
Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
4 weeks ago
Wolfgang Huber
★ 13k
0
votes
1
reply
329
views
News:
Bioconductor Board Nominations Open
TAB
Bioconductor
CAB
written 3 months ago by
shepherl
4.2k
0
votes
0
replies
189
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 9 weeks ago by
Michael Love
43k • written 3 months ago by
Sabina
• 0
0
votes
0
replies
184
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
3 months ago
Wei Shi
★ 3.6k
0
votes
3
replies
2.2k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma
Bioconductor
Metabolomics
updated 3 months ago by
Gordon Smyth
53k • written 3 months ago by
anni
• 0
0
votes
2
replies
977
views
Starting with a clean bioconductor rstudio container
Bioconductor
updated 3 months ago by
ATpoint
★ 5.0k • written 4 months ago by
Ramiro
• 0
0
votes
9
replies
13k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 4 months ago by
Hadi
• 0 • written 4.2 years ago by
charlotte
▴ 10
0
votes
0
replies
286
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
4 months ago
Gordon Smyth
53k
0
votes
4
replies
8.6k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
written 2.1 years ago by
Aytaç
• 0
0
votes
2
replies
501
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 8 weeks ago by
Liona
• 0 • written 5 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
427
views
Best tximport quant.genes.sf
tximport
tximeta
Bioconductor
updated 5 months ago by
ATpoint
★ 5.0k • written 5 months ago by
yob4003
• 0
0
votes
2
replies
799
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 6 months ago by
XFWu
• 0
1
vote
5
replies
1.7k
views
Package developing and interoperation with Bioconductor
Package
Bioconductor
written 6 months ago by
slizchap
• 0
0
votes
5
replies
2.5k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
written 20 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
686
views
News:
List of Deprecated Packages for Bioc3.20
Release
Devel
Bioconductor
12 months ago • updated 6 months ago
shepherl
4.2k
0
votes
0
replies
482
views
News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
Community
Conference
Bioconductor
8 months ago
Maria Doyle
▴ 100
0
votes
3
replies
623
views
batch effect removal for agilent microarray data
"
"Bioconductor"
Bioconductor
8 months ago
gaye.yilmaz
• 0
0
votes
0
replies
447
views
Job:
Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
8 months ago
Wolfgang Huber
★ 13k
0
votes
5
replies
1.7k
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 8 months ago by
shepherl
4.2k • written 8 months ago by
azm.ana2
• 0
0
votes
0
replies
360
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
8 months ago
Maria Doyle
▴ 100
0
votes
0
replies
249
views
News:
Announcing the GBCC2025 Logo Design Winner!
Community
Conference
GBCC2025
Bioconductor
8 months ago
Maria Doyle
▴ 100
1
vote
0
replies
553
views
News:
Bioconductor Course, Kenya 2025: Applications Open!
Events
Community
Training
Africa
Bioconductor
8 months ago
Maria Doyle
▴ 100
0
votes
4
replies
2.2k
views
News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
written 2.5 years ago by
Maria Doyle
▴ 100
0
votes
2
replies
573
views
Build error on kunpeng2 Linux aarch64
Bioconductor
updated 9 months ago by
wise
• 0 • written 10 months ago by
Hongxiang
• 0
2
votes
1
reply
774
views
bioconductor packages on bioconda
Bioconductor
updated 10 months ago by
James W. MacDonald
68k • written 10 months ago by
risch.vinzent
• 0
1
vote
3
replies
996
views
Allele frequencies for ALL alleles of one SNP ?
Bioconductor
11 months ago
Abiologist
• 0
10
votes
7
replies
2.3k
views
Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 11 months ago by
shepherl
4.2k • written 2.7 years ago by
L
▴ 50
1
vote
0
replies
1.3k
views
News:
Bioconductor 3.20 is Released!
Bioconductor
Release
Software
11 months ago
shepherl
4.2k
0
votes
0
replies
520
views
News:
Announcing the GBCC2025 Logo Design Contest!
Conference
Community
Galaxy
GBCC2025
Bioconductor
11 months ago
Maria Doyle
▴ 100
1
vote
3
replies
1.2k
views
Tutorial regarding metabolomics with R
Bioconductor
Metabolomics
xcms
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
abhisek001
• 0
1
vote
2
replies
999
views
DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2
Bioconductor
updated 12 months ago by
Michael Love
43k • written 13 months ago by
JT
▴ 10
900 results • Page
1 of 18
Recent ...
Replies
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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Gordon Smyth
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