Showing : Bioconductor • reset
1
vote
2
replies
160
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DESeq2 design for haplotype MPRA
Bioconductor
8 days ago • updated 7 days ago Rita • 0
0
votes
3
replies
156
views
"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
Bioconductor
8 days ago • updated 7 days ago ubjw24 • 0
0
votes
3
replies
250
views
NA values for DESeq2 p-values and adjusted p-values using large sample sizes
Bioconductor
18 days ago • updated 6 days ago Gabriel • 0
0
votes
0
replies
64
views
Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
14 days ago acharyapratiksha24 • 0
0
votes
1
reply
81
views
Gatins Set error
flowCore Bioconductor
updated 19 days ago by 68k • written 19 days ago by • 0
0
votes
1
reply
75
views
Job: Senior Teaching Fellow (MSc Computational Biomedicine)
Bioconductor
written 19 days ago by • 0
0
votes
0
replies
48
views
What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
19 days ago Matthew Thornton ▴ 380
0
votes
0
replies
99
views
News: Bioconductor 3.22 Release Schedule
Devel Release Bioconductor
5 weeks ago • updated 19 days ago shepherl 4.2k
1
vote
1
reply
150
views
incomplete imputation of missing values with LEA impute() function
Bioconductor LEA
21 days ago • updated 20 days ago nadia • 0
1
vote
1
reply
229
views
Streamlining the computing time for MiloDE p-value correction in large dataset?
SingleCellExperiment edgeR miloR Bioconductor
updated 18 days ago by ★ 5.0k • written 22 days ago by • 0
0
votes
0
replies
59
views
featureCounts -L: high unassigned:mapq fraction
Bioconductor
updated 21 days ago by 68k • written 22 days ago by • 0
1
vote
2
replies
237
views
Error Loading Experiment from SimBenchData Package
Bioconductor
25 days ago • updated 15 days ago ksankaran • 0
0
votes
7
replies
1.9k
views
News: EuroBioC2023 abstract submission is open!
presentation EuroBioC2023 Conference community Bioconductor
written 2.6 years ago by ▴ 100
0
votes
3
replies
248
views
Sharing a collection of datasets in ExperimentHub
Bioconductor
updated 21 days ago by ★ 29k • written 4 weeks ago by ▴ 600
1
vote
0
replies
163
views
DESeq2 for candidate gene analysis
Bioconductor
4 weeks ago piffelpaff ▴ 10
0
votes
1
reply
103
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor SpliceWiz
4 weeks ago • updated 29 days ago jalte.jelsing • 0
0
votes
0
replies
60
views
Problem with the TMB plot
Bioconductor
4 weeks ago nayanajose • 0
0
votes
0
replies
102
views
After running samtools, the featureCounts command crashed.
RNASeqData Bioconductor RNASeq
updated 12 days ago by 43k • written 5 weeks ago by • 0
0
votes
6
replies
346
views
GO.db and others package Download failure
GO.db Bioconductor
updated 4 weeks ago by 68k • written 5 weeks ago by • 0
0
votes
0
replies
77
views
Job: Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
5 weeks ago Wolfgang Huber ★ 13k
0
votes
1
reply
332
views
News: Bioconductor Board Nominations Open
TAB Bioconductor CAB
written 3 months ago by 4.2k
0
votes
0
replies
190
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO Bioconductor Arabidopsis_thaliana_Data
updated 9 weeks ago by 43k • written 3 months ago by • 0
0
votes
0
replies
185
views
News: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
3 months ago Wei Shi ★ 3.6k
0
votes
3
replies
2.3k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma Bioconductor Metabolomics
updated 3 months ago by 53k • written 3 months ago by • 0
0
votes
2
replies
980
views
Starting with a clean bioconductor rstudio container
Bioconductor
updated 4 months ago by ★ 5.0k • written 4 months ago by • 0
0
votes
9
replies
13k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 4 months ago by • 0 • written 4.2 years ago by ▴ 10
0
votes
0
replies
296
views
Job: Lab Head positions at the WEHI, Melbourne, Australia
JobPosting Bioconductor
4 months ago Gordon Smyth 53k
0
votes
4
replies
8.6k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
written 2.1 years ago by • 0
0
votes
2
replies
502
views
GBCC2025: New Scholarship Opportunities Available!
Community Conference GBCC2025 Bioconductor
updated 8 weeks ago by • 0 • written 5 months ago by ▴ 100
0
votes
1
reply
429
views
Best tximport quant.genes.sf
tximport tximeta Bioconductor
updated 5 months ago by ★ 5.0k • written 5 months ago by • 0
0
votes
2
replies
800
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 6 months ago by • 0
1
vote
5
replies
1.7k
views
Package developing and interoperation with Bioconductor
Package Bioconductor
written 6 months ago by • 0
0
votes
5
replies
2.5k
views
News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
written 20 months ago by ▴ 100
0
votes
1
reply
689
views
News: List of Deprecated Packages for Bioc3.20
Release Devel Bioconductor
12 months ago • updated 6 months ago shepherl 4.2k
0
votes
0
replies
484
views
News: EuroBioC2025: Abstract Submissions Open!
EuroBioC2025 Community Conference Bioconductor
8 months ago Maria Doyle ▴ 100
0
votes
3
replies
624
views
batch effect removal for agilent microarray data
" "Bioconductor" Bioconductor
8 months ago gaye.yilmaz • 0
0
votes
0
replies
451
views
Job: Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
8 months ago Wolfgang Huber ★ 13k
0
votes
5
replies
1.7k
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 8 months ago by 4.2k • written 8 months ago by • 0
0
votes
0
replies
360
views
News: GBCC2025 Abstract Submissions & Registration Now Open!
Community Conference GBCC2025 Bioconductor
8 months ago Maria Doyle ▴ 100
0
votes
0
replies
249
views
News: Announcing the GBCC2025 Logo Design Winner!
Community Conference GBCC2025 Bioconductor
8 months ago Maria Doyle ▴ 100
1
vote
0
replies
554
views
News: Bioconductor Course, Kenya 2025: Applications Open!
Events Community Training Africa Bioconductor
8 months ago Maria Doyle ▴ 100
0
votes
4
replies
2.2k
views
News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
written 2.5 years ago by ▴ 100
0
votes
2
replies
579
views
Build error on kunpeng2 Linux aarch64
Bioconductor
updated 9 months ago by • 0 • written 10 months ago by • 0
2
votes
1
reply
775
views
bioconductor packages on bioconda
Bioconductor
updated 11 months ago by 68k • written 11 months ago by • 0
1
vote
3
replies
996
views
Allele frequencies for ALL alleles of one SNP ?
Bioconductor
11 months ago Abiologist • 0
10
votes
7
replies
2.3k
views
Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 11 months ago by 4.2k • written 2.7 years ago by ▴ 50
1
vote
0
replies
1.3k
views
News: Bioconductor 3.20 is Released!
Bioconductor Release Software
11 months ago shepherl 4.2k
0
votes
0
replies
521
views
News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
12 months ago Maria Doyle ▴ 100
1
vote
3
replies
1.2k
views
Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 12 months ago by 68k • written 12 months ago by • 0
1
vote
2
replies
999
views
DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 12 months ago by 43k • written 13 months ago by ▴ 10
900 results • Page 1 of 18
Recent ...
Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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