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Bioconductor
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160
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DESeq2 design for haplotype MPRA
Bioconductor
8 days ago • updated 7 days ago
Rita
• 0
0
votes
3
replies
156
views
"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
Bioconductor
8 days ago • updated 7 days ago
ubjw24
• 0
0
votes
3
replies
250
views
NA values for DESeq2 p-values and adjusted p-values using large sample sizes
Bioconductor
18 days ago • updated 6 days ago
Gabriel
• 0
0
votes
0
replies
64
views
Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
14 days ago
acharyapratiksha24
• 0
0
votes
1
reply
81
views
Gatins Set error
flowCore
Bioconductor
updated 19 days ago by
James W. MacDonald
68k • written 19 days ago by
yoav.lubelsky
• 0
0
votes
1
reply
75
views
Job:
Senior Teaching Fellow (MSc Computational Biomedicine)
Bioconductor
written 19 days ago by
s.samarajiwa
• 0
0
votes
0
replies
48
views
What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
19 days ago
Matthew Thornton
▴ 380
0
votes
0
replies
99
views
News:
Bioconductor 3.22 Release Schedule
Devel
Release
Bioconductor
5 weeks ago • updated 19 days ago
shepherl
4.2k
1
vote
1
reply
150
views
incomplete imputation of missing values with LEA impute() function
Bioconductor
LEA
21 days ago • updated 20 days ago
nadia
• 0
1
vote
1
reply
229
views
Streamlining the computing time for MiloDE p-value correction in large dataset?
SingleCellExperiment
edgeR
miloR
Bioconductor
updated 18 days ago by
ATpoint
★ 5.0k • written 22 days ago by
Joseph
• 0
0
votes
0
replies
59
views
featureCounts -L: high unassigned:mapq fraction
Bioconductor
updated 21 days ago by
James W. MacDonald
68k • written 22 days ago by
sikora
• 0
1
vote
2
replies
237
views
Error Loading Experiment from SimBenchData Package
Bioconductor
25 days ago • updated 15 days ago
ksankaran
• 0
0
votes
7
replies
1.9k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
written 2.6 years ago by
Maria Doyle
▴ 100
0
votes
3
replies
248
views
Sharing a collection of datasets in ExperimentHub
Bioconductor
updated 21 days ago by
Aaron Lun
★ 29k • written 4 weeks ago by
Stephen Piccolo
▴ 600
1
vote
0
replies
163
views
DESeq2 for candidate gene analysis
Bioconductor
4 weeks ago
piffelpaff
▴ 10
0
votes
1
reply
103
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor
SpliceWiz
4 weeks ago • updated 29 days ago
jalte.jelsing
• 0
0
votes
0
replies
60
views
Problem with the TMB plot
Bioconductor
4 weeks ago
nayanajose
• 0
0
votes
0
replies
102
views
After running samtools, the featureCounts command crashed.
RNASeqData
Bioconductor
RNASeq
updated 12 days ago by
Michael Love
43k • written 5 weeks ago by
Rui
• 0
0
votes
6
replies
346
views
GO.db and others package Download failure
GO.db
Bioconductor
updated 4 weeks ago by
James W. MacDonald
68k • written 5 weeks ago by
Skyler
• 0
0
votes
0
replies
77
views
Job:
Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
5 weeks ago
Wolfgang Huber
★ 13k
0
votes
1
reply
332
views
News:
Bioconductor Board Nominations Open
TAB
Bioconductor
CAB
written 3 months ago by
shepherl
4.2k
0
votes
0
replies
190
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 9 weeks ago by
Michael Love
43k • written 3 months ago by
Sabina
• 0
0
votes
0
replies
185
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
3 months ago
Wei Shi
★ 3.6k
0
votes
3
replies
2.3k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma
Bioconductor
Metabolomics
updated 3 months ago by
Gordon Smyth
53k • written 3 months ago by
anni
• 0
0
votes
2
replies
980
views
Starting with a clean bioconductor rstudio container
Bioconductor
updated 4 months ago by
ATpoint
★ 5.0k • written 4 months ago by
Ramiro
• 0
0
votes
9
replies
13k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 4 months ago by
Hadi
• 0 • written 4.2 years ago by
charlotte
▴ 10
0
votes
0
replies
296
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
4 months ago
Gordon Smyth
53k
0
votes
4
replies
8.6k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
written 2.1 years ago by
Aytaç
• 0
0
votes
2
replies
502
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 8 weeks ago by
Liona
• 0 • written 5 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
429
views
Best tximport quant.genes.sf
tximport
tximeta
Bioconductor
updated 5 months ago by
ATpoint
★ 5.0k • written 5 months ago by
yob4003
• 0
0
votes
2
replies
800
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 6 months ago by
XFWu
• 0
1
vote
5
replies
1.7k
views
Package developing and interoperation with Bioconductor
Package
Bioconductor
written 6 months ago by
slizchap
• 0
0
votes
5
replies
2.5k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
written 20 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
689
views
News:
List of Deprecated Packages for Bioc3.20
Release
Devel
Bioconductor
12 months ago • updated 6 months ago
shepherl
4.2k
0
votes
0
replies
484
views
News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
Community
Conference
Bioconductor
8 months ago
Maria Doyle
▴ 100
0
votes
3
replies
624
views
batch effect removal for agilent microarray data
"
"Bioconductor"
Bioconductor
8 months ago
gaye.yilmaz
• 0
0
votes
0
replies
451
views
Job:
Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
8 months ago
Wolfgang Huber
★ 13k
0
votes
5
replies
1.7k
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 8 months ago by
shepherl
4.2k • written 8 months ago by
azm.ana2
• 0
0
votes
0
replies
360
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
8 months ago
Maria Doyle
▴ 100
0
votes
0
replies
249
views
News:
Announcing the GBCC2025 Logo Design Winner!
Community
Conference
GBCC2025
Bioconductor
8 months ago
Maria Doyle
▴ 100
1
vote
0
replies
554
views
News:
Bioconductor Course, Kenya 2025: Applications Open!
Events
Community
Training
Africa
Bioconductor
8 months ago
Maria Doyle
▴ 100
0
votes
4
replies
2.2k
views
News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
written 2.5 years ago by
Maria Doyle
▴ 100
0
votes
2
replies
579
views
Build error on kunpeng2 Linux aarch64
Bioconductor
updated 9 months ago by
wise
• 0 • written 10 months ago by
Hongxiang
• 0
2
votes
1
reply
775
views
bioconductor packages on bioconda
Bioconductor
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
risch.vinzent
• 0
1
vote
3
replies
996
views
Allele frequencies for ALL alleles of one SNP ?
Bioconductor
11 months ago
Abiologist
• 0
10
votes
7
replies
2.3k
views
Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 11 months ago by
shepherl
4.2k • written 2.7 years ago by
L
▴ 50
1
vote
0
replies
1.3k
views
News:
Bioconductor 3.20 is Released!
Bioconductor
Release
Software
11 months ago
shepherl
4.2k
0
votes
0
replies
521
views
News:
Announcing the GBCC2025 Logo Design Contest!
Conference
Community
Galaxy
GBCC2025
Bioconductor
12 months ago
Maria Doyle
▴ 100
1
vote
3
replies
1.2k
views
Tutorial regarding metabolomics with R
Bioconductor
Metabolomics
xcms
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
abhisek001
• 0
1
vote
2
replies
999
views
DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2
Bioconductor
updated 12 months ago by
Michael Love
43k • written 13 months ago by
JT
▴ 10
900 results • Page
1 of 18
Recent ...
Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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