Showing : Bioconductor • reset
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News: The BioC2026 Sticker Design Contest is Open!
Bioconductor Conference
3 days ago laurah ondari • 0
0
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1
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85
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Are individual-mouse-based statistics possible in CellChat?
Bioconductor CellChat
updated 1 day ago by • 0 • written 5 days ago by • 0
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0
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87
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MSstatsPTM-SpectronauttoMSstatsPTMFormat-failing with TAIR10 Locus Tags: Issue with UniProt-centric protein ID parsing
Bioconductor MSstatsPTM
6 days ago srkingwu • 0
1
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0
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89
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News: Bioconductor Maintainer Application
maintainer policy Bioconductor Devel devel
10 days ago shepherl 4.3k
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1
reply
333
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News: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
written 6 months ago by ★ 3.6k
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203
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please provide a BibTeX citation for "Advanced Single-Cell Analysis with Bioconductor"
Bioconductor
written 14 days ago by ▴ 10
0
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1
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252
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News: Opportunity to host EuroBioC2026 Preconference workshops!
Conference Workshop Bioconductor
written 4 weeks ago by • 0
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1
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323
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News: EuroBioC2026 abstract submission is open!
Conference Bioconductor
written 7 weeks ago by • 0
3
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5
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560
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upstream git branches of bioc-release
Bioconductor
written 8 weeks ago by ▴ 10
0
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1
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446
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Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO Bioconductor Arabidopsis_thaliana_Data
updated 8 weeks ago by ★ 4.0k • written 6 months ago by • 0
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2
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513
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After running samtools, the featureCounts command crashed.
RNASeqData Bioconductor RNASeq
updated 7 weeks ago by • 0 • written 4 months ago by • 0
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2
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621
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Problem with the TMB plot
Bioconductor
written 4 months ago by • 0
2
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3
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578
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DESeq2 design for haplotype MPRA
Bioconductor
written 3 months ago by • 0
0
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0
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332
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Problem with viewGO(ref_path) in SpliceWiz
Bioconductor SpliceWiz
updated 8 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
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2
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254
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Alternative to BrainArray custom CDF packages for Affymetrix chips?
Bioconductor
updated 8 weeks ago by ★ 4.1k • written 9 weeks ago by ▴ 600
1
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0
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122
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News: Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
9 weeks ago Maria Doyle ▴ 110
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2
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354
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featureCounts -L: high unassigned:mapq fraction
Bioconductor
written 3 months ago by • 0
1
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2
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477
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Streamlining the computing time for MiloDE p-value correction in large dataset?
SingleCellExperiment edgeR miloR Bioconductor
updated 10 weeks ago by ★ 4.0k • written 3 months ago by • 0
1
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2
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459
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incomplete imputation of missing values with LEA impute() function
Bioconductor LEA
updated 10 weeks ago by ★ 4.0k • written 3 months ago by • 0
2
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2
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603
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What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
3 months ago • updated 9 weeks ago Matthew Thornton ▴ 390
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314
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Integration: Paired-end vs healthy single-end from a different source
Bioconductor
written 11 weeks ago by • 0
1
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4
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457
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"Watched Tags" are being erased rather than updated
Bioconductor
updated 9 weeks ago by • 0 • written 11 weeks ago by ▴ 10
0
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1
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258
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Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
updated 10 weeks ago by 43k • written 3 months ago by • 0
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7
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2.2k
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News: EuroBioC2023 abstract submission is open!
presentation EuroBioC2023 Conference community Bioconductor
written 2.9 years ago by ▴ 110
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0
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12
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Spam: The Neon Code PolyTrack
Bioconductor
11 weeks ago residentialplayt 0
2
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1
reply
553
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News: Bioconductor 3.22 Released!
release Release Bioconductor Software
written 11 weeks ago by 4.3k
0
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1
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478
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News: Save the Date: BioC2026
Bioconductor
written 11 weeks ago by 4.3k
0
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3
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278
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Using DESeq2 for age prediction
Bioconductor
updated 12 weeks ago by ★ 5.0k • written 12 weeks ago by • 0
4
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3
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645
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DESeq2 for candidate gene analysis
Bioconductor
written 4 months ago by ▴ 20
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3
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341
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"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
Bioconductor
3 months ago ubjw24 • 0
0
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3
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478
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NA values for DESeq2 p-values and adjusted p-values using large sample sizes
Bioconductor
3 months ago Gabriel • 0
0
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1
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193
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Gatins Set error
flowCore Bioconductor
updated 3 months ago by 68k • written 3 months ago by • 0
0
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1
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261
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Job: Senior Teaching Fellow (MSc Computational Biomedicine)
Bioconductor
written 3 months ago by • 0
0
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1
reply
748
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News: Bioconductor 3.22 Release Schedule
Devel Release Bioconductor
written 4 months ago by 4.3k
1
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2
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379
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Error Loading Experiment from SimBenchData Package
Bioconductor
3 months ago ksankaran • 0
0
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3
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389
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Sharing a collection of datasets in ExperimentHub
Bioconductor
updated 3 months ago by ★ 29k • written 3 months ago by ▴ 600
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6
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612
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GO.db and others package Download failure
GO.db Bioconductor
updated 4 months ago by 68k • written 4 months ago by • 0
0
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1
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227
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Job: Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
written 4 months ago by ★ 13k
0
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1
reply
407
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News: Bioconductor Board Nominations Open
TAB Bioconductor CAB
written 6 months ago by 4.3k
0
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3
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2.5k
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Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma Bioconductor Metabolomics
updated 6 months ago by 53k • written 6 months ago by • 0
0
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2
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1.1k
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Starting with a clean bioconductor rstudio container
Bioconductor
updated 7 months ago by ★ 5.0k • written 7 months ago by • 0
0
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9
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13k
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Bioconductor version cannot be validated
BiocManager Bioconductor
updated 7 months ago by • 0 • written 4.5 years ago by ▴ 10
0
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0
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377
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Job: Lab Head positions at the WEHI, Melbourne, Australia
JobPosting Bioconductor
7 months ago Gordon Smyth 53k
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4
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9.2k
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Bioconductor version cannot be validated
Bioconductor Annotation Ann
written 2.3 years ago by • 0
0
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2
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615
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GBCC2025: New Scholarship Opportunities Available!
Community Conference GBCC2025 Bioconductor
updated 5 months ago by • 0 • written 8 months ago by ▴ 110
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1
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507
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Best tximport quant.genes.sf
tximport tximeta Bioconductor
updated 8 months ago by ★ 5.0k • written 8 months ago by • 0
0
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2
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863
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Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 9 months ago by • 0
1
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5
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1.9k
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Package developing and interoperation with Bioconductor
Package Bioconductor
written 9 months ago by • 0
0
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5
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2.8k
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
written 23 months ago by ▴ 110
0
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1
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941
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News: List of Deprecated Packages for Bioc3.20
Release Devel Bioconductor
15 months ago • updated 9 months ago shepherl 4.3k
916 results • Page 1 of 19
Recent ...
Replies
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by ATpoint ★ 5.0k
Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening in a clean install
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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