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Bioconductor
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News:
Opportunity to host EuroBioC2026 Preconference workshops!
Conference
Workshop
Bioconductor
12 days ago
laurah ondari
• 0
0
votes
1
reply
173
views
News:
EuroBioC2026 abstract submission is open!
Conference
Bioconductor
updated 8 days ago by
TikTsokaasocissalpc
• 0 • written 4 weeks ago by
laurah ondari
• 0
3
votes
5
replies
496
views
upstream git branches of bioc-release
Bioconductor
written 5 weeks ago by
Jeroen
▴ 10
0
votes
1
reply
397
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 5 weeks ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
Sabina
• 0
0
votes
2
replies
482
views
After running samtools, the featureCounts command crashed.
RNASeqData
Bioconductor
RNASeq
updated 29 days ago by
MarcHintz99
• 0 • written 3 months ago by
Rui
• 0
0
votes
1
reply
535
views
Problem with the TMB plot
Bioconductor
updated 5 weeks ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
nayanajose
• 0
2
votes
3
replies
529
views
DESeq2 design for haplotype MPRA
Bioconductor
written 10 weeks ago by
Rita
• 0
0
votes
0
replies
290
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor
SpliceWiz
updated 5 weeks ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
jalte.jelsing
• 0
0
votes
2
replies
212
views
Alternative to BrainArray custom CDF packages for Affymetrix chips?
Bioconductor
updated 5 weeks ago by
Guido Hooiveld
★ 4.1k • written 6 weeks ago by
Stephen Piccolo
▴ 600
1
vote
0
replies
98
views
News:
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
6 weeks ago
Maria Doyle
▴ 110
0
votes
2
replies
298
views
featureCounts -L: high unassigned:mapq fraction
Bioconductor
written 3 months ago by
sikora
• 0
1
vote
2
replies
458
views
Streamlining the computing time for MiloDE p-value correction in large dataset?
SingleCellExperiment
edgeR
miloR
Bioconductor
updated 7 weeks ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
Joseph
• 0
1
vote
2
replies
400
views
incomplete imputation of missing values with LEA impute() function
Bioconductor
LEA
updated 7 weeks ago by
Kevin Blighe
★ 4.0k • written 12 weeks ago by
nadia
• 0
2
votes
2
replies
548
views
What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
12 weeks ago • updated 6 weeks ago
Matthew Thornton
▴ 390
0
votes
3
replies
280
views
Integration: Paired-end vs healthy single-end from a different source
Bioconductor
written 8 weeks ago by
m.c.ruma
• 0
1
vote
4
replies
429
views
"Watched Tags" are being erased rather than updated
Bioconductor
updated 6 weeks ago by
RalphSavage99
• 0 • written 8 weeks ago by
jessica.anderson
▴ 10
0
votes
1
reply
246
views
Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
updated 7 weeks ago by
Michael Love
43k • written 11 weeks ago by
acharyapratiksha24
• 0
0
votes
7
replies
2.1k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
written 2.8 years ago by
Maria Doyle
▴ 110
0
votes
0
replies
12
views
Spam:
The Neon Code PolyTrack
Bioconductor
8 weeks ago
residentialplayt
0
2
votes
1
reply
368
views
News:
Bioconductor 3.22 Released!
release
Release
Bioconductor
Software
written 8 weeks ago by
shepherl
4.2k
0
votes
1
reply
181
views
News:
Save the Date: BioC2026
Bioconductor
written 8 weeks ago by
shepherl
4.2k
0
votes
3
replies
268
views
Using DESeq2 for age prediction
Bioconductor
updated 9 weeks ago by
ATpoint
★ 5.0k • written 9 weeks ago by
picasa1983
• 0
4
votes
3
replies
623
views
DESeq2 for candidate gene analysis
Bioconductor
written 3 months ago by
piffelpaff
▴ 20
0
votes
3
replies
306
views
"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
Bioconductor
10 weeks ago
ubjw24
• 0
0
votes
3
replies
451
views
NA values for DESeq2 p-values and adjusted p-values using large sample sizes
Bioconductor
12 weeks ago • updated 10 weeks ago
Gabriel
• 0
0
votes
1
reply
175
views
Gatins Set error
flowCore
Bioconductor
updated 12 weeks ago by
James W. MacDonald
68k • written 12 weeks ago by
yoav.lubelsky
• 0
0
votes
1
reply
247
views
Job:
Senior Teaching Fellow (MSc Computational Biomedicine)
Bioconductor
written 12 weeks ago by
s.samarajiwa
• 0
0
votes
1
reply
553
views
News:
Bioconductor 3.22 Release Schedule
Devel
Release
Bioconductor
written 3 months ago by
shepherl
4.2k
1
vote
2
replies
366
views
Error Loading Experiment from SimBenchData Package
Bioconductor
3 months ago • updated 12 weeks ago
ksankaran
• 0
0
votes
3
replies
361
views
Sharing a collection of datasets in ExperimentHub
Bioconductor
updated 12 weeks ago by
Aaron Lun
★ 29k • written 3 months ago by
Stephen Piccolo
▴ 600
0
votes
6
replies
520
views
GO.db and others package Download failure
GO.db
Bioconductor
updated 3 months ago by
James W. MacDonald
68k • written 3 months ago by
Skyler
• 0
0
votes
1
reply
214
views
Job:
Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
written 3 months ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
396
views
News:
Bioconductor Board Nominations Open
TAB
Bioconductor
CAB
written 5 months ago by
shepherl
4.2k
0
votes
0
replies
247
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
5 months ago
Wei Shi
★ 3.6k
0
votes
3
replies
2.4k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma
Bioconductor
Metabolomics
updated 5 months ago by
Gordon Smyth
53k • written 6 months ago by
anni
• 0
0
votes
2
replies
1.1k
views
Starting with a clean bioconductor rstudio container
Bioconductor
updated 6 months ago by
ATpoint
★ 5.0k • written 6 months ago by
Ramiro
• 0
0
votes
9
replies
13k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 6 months ago by
Hadi
• 0 • written 4.4 years ago by
charlotte
▴ 10
0
votes
0
replies
363
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
6 months ago
Gordon Smyth
53k
0
votes
4
replies
9.0k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
written 2.3 years ago by
Aytaç
• 0
0
votes
2
replies
600
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 4 months ago by
Liona
• 0 • written 7 months ago by
Maria Doyle
▴ 110
0
votes
1
reply
486
views
Best tximport quant.genes.sf
tximport
tximeta
Bioconductor
updated 7 months ago by
ATpoint
★ 5.0k • written 7 months ago by
yob4003
• 0
0
votes
2
replies
849
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 8 months ago by
XFWu
• 0
1
vote
5
replies
1.8k
views
Package developing and interoperation with Bioconductor
Package
Bioconductor
written 9 months ago by
slizchap
• 0
0
votes
5
replies
2.7k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
written 22 months ago by
Maria Doyle
▴ 110
0
votes
1
reply
898
views
News:
List of Deprecated Packages for Bioc3.20
Release
Devel
Bioconductor
14 months ago • updated 9 months ago
shepherl
4.2k
0
votes
0
replies
591
views
News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
Community
Conference
Bioconductor
10 months ago
Maria Doyle
▴ 110
0
votes
3
replies
699
views
batch effect removal for agilent microarray data
"
"Bioconductor"
Bioconductor
10 months ago
gaye.yilmaz
• 0
0
votes
0
replies
629
views
Job:
Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
10 months ago
Wolfgang Huber
★ 13k
0
votes
5
replies
2.1k
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 10 months ago by
shepherl
4.2k • written 10 months ago by
azm.ana2
• 0
0
votes
0
replies
518
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
10 months ago
Maria Doyle
▴ 110
911 results • Page
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Comment: Empty boxes in treemap plot rrvgo package
by
TikTsokaasocissalpc
• 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
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TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
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• 0
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Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Votes
Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
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