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Alternative to BrainArray custom CDF packages for Affymetrix chips?
Bioconductor
1 day ago
Stephen Piccolo
▴ 600
0
votes
0
replies
19
views
News:
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
1 day ago
Maria Doyle
▴ 100
0
votes
2
replies
289
views
After running samtools, the featureCounts command crashed.
RNASeqData
Bioconductor
RNASeq
written 8 weeks ago by
Rui
• 0
0
votes
1
reply
411
views
Problem with the TMB plot
Bioconductor
updated 8 days ago by
Kevin Blighe
★ 4.0k • written 8 weeks ago by
nayanajose
• 0
0
votes
1
reply
198
views
featureCounts -L: high unassigned:mapq fraction
Bioconductor
updated 8 days ago by
Kevin Blighe
★ 4.0k • written 6 weeks ago by
sikora
• 0
1
vote
2
replies
392
views
Streamlining the computing time for MiloDE p-value correction in large dataset?
SingleCellExperiment
edgeR
miloR
Bioconductor
updated 8 days ago by
Kevin Blighe
★ 4.0k • written 6 weeks ago by
Joseph
• 0
1
vote
2
replies
343
views
incomplete imputation of missing values with LEA impute() function
Bioconductor
LEA
updated 8 days ago by
Kevin Blighe
★ 4.0k • written 6 weeks ago by
nadia
• 0
1
vote
2
replies
461
views
What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
6 weeks ago • updated 5 days ago
Matthew Thornton
▴ 380
0
votes
3
replies
231
views
Integration: Paired-end vs healthy single-end from a different source
Bioconductor
written 12 days ago by
m.c.ruma
• 0
1
vote
4
replies
357
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"Watched Tags" are being erased rather than updated
Bioconductor
updated 2 hours ago by
RalphSavage99
• 0 • written 16 days ago by
jessica.anderson
▴ 10
0
votes
1
reply
200
views
Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
updated 12 days ago by
Michael Love
43k • written 5 weeks ago by
acharyapratiksha24
• 0
0
votes
7
replies
2.1k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
written 2.7 years ago by
Maria Doyle
▴ 100
0
votes
0
replies
12
views
Spam:
The Neon Code PolyTrack
Bioconductor
16 days ago
residentialplayt
0
2
votes
1
reply
148
views
News:
Bioconductor 3.22 Released!
release
Release
Bioconductor
Software
written 16 days ago by
shepherl
4.2k
0
votes
1
reply
120
views
News:
Save the Date: BioC2026
Bioconductor
written 19 days ago by
shepherl
4.2k
0
votes
3
replies
222
views
Using DESeq2 for age prediction
Bioconductor
updated 20 days ago by
ATpoint
★ 5.0k • written 22 days ago by
picasa1983
• 0
4
votes
3
replies
563
views
DESeq2 for candidate gene analysis
Bioconductor
written 8 weeks ago by
piffelpaff
▴ 20
2
votes
2
replies
402
views
DESeq2 design for haplotype MPRA
Bioconductor
4 weeks ago
Rita
• 0
0
votes
3
replies
263
views
"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
Bioconductor
4 weeks ago
ubjw24
• 0
0
votes
3
replies
394
views
NA values for DESeq2 p-values and adjusted p-values using large sample sizes
Bioconductor
6 weeks ago • updated 4 weeks ago
Gabriel
• 0
0
votes
1
reply
145
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Gatins Set error
flowCore
Bioconductor
updated 6 weeks ago by
James W. MacDonald
68k • written 6 weeks ago by
yoav.lubelsky
• 0
0
votes
1
reply
164
views
Job:
Senior Teaching Fellow (MSc Computational Biomedicine)
Bioconductor
written 6 weeks ago by
s.samarajiwa
• 0
0
votes
0
replies
280
views
News:
Bioconductor 3.22 Release Schedule
Devel
Release
Bioconductor
8 weeks ago • updated 6 weeks ago
shepherl
4.2k
1
vote
2
replies
315
views
Error Loading Experiment from SimBenchData Package
Bioconductor
7 weeks ago • updated 5 weeks ago
ksankaran
• 0
0
votes
3
replies
317
views
Sharing a collection of datasets in ExperimentHub
Bioconductor
updated 6 weeks ago by
Aaron Lun
★ 29k • written 7 weeks ago by
Stephen Piccolo
▴ 600
0
votes
1
reply
202
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor
SpliceWiz
8 weeks ago • updated 7 weeks ago
jalte.jelsing
• 0
0
votes
6
replies
454
views
GO.db and others package Download failure
GO.db
Bioconductor
updated 8 weeks ago by
James W. MacDonald
68k • written 8 weeks ago by
Skyler
• 0
0
votes
1
reply
170
views
Job:
Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
written 8 weeks ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
356
views
News:
Bioconductor Board Nominations Open
TAB
Bioconductor
CAB
written 4 months ago by
shepherl
4.2k
0
votes
0
replies
227
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 3 months ago by
Michael Love
43k • written 4 months ago by
Sabina
• 0
0
votes
0
replies
205
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
4 months ago
Wei Shi
★ 3.6k
0
votes
3
replies
2.3k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma
Bioconductor
Metabolomics
updated 4 months ago by
Gordon Smyth
53k • written 4 months ago by
anni
• 0
0
votes
2
replies
1.0k
views
Starting with a clean bioconductor rstudio container
Bioconductor
updated 4 months ago by
ATpoint
★ 5.0k • written 5 months ago by
Ramiro
• 0
0
votes
9
replies
13k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 5 months ago by
Hadi
• 0 • written 4.3 years ago by
charlotte
▴ 10
0
votes
0
replies
327
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
5 months ago
Gordon Smyth
53k
0
votes
4
replies
8.8k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
written 2.2 years ago by
Aytaç
• 0
0
votes
2
replies
536
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 12 weeks ago by
Liona
• 0 • written 5 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
449
views
Best tximport quant.genes.sf
tximport
tximeta
Bioconductor
updated 6 months ago by
ATpoint
★ 5.0k • written 6 months ago by
yob4003
• 0
0
votes
2
replies
817
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 7 months ago by
XFWu
• 0
1
vote
5
replies
1.8k
views
Package developing and interoperation with Bioconductor
Package
Bioconductor
written 7 months ago by
slizchap
• 0
0
votes
5
replies
2.6k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
written 21 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
820
views
News:
List of Deprecated Packages for Bioc3.20
Release
Devel
Bioconductor
13 months ago • updated 7 months ago
shepherl
4.2k
0
votes
0
replies
522
views
News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
Community
Conference
Bioconductor
8 months ago
Maria Doyle
▴ 100
0
votes
3
replies
655
views
batch effect removal for agilent microarray data
"
"Bioconductor"
Bioconductor
9 months ago • updated 8 months ago
gaye.yilmaz
• 0
0
votes
0
replies
575
views
Job:
Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
9 months ago
Wolfgang Huber
★ 13k
0
votes
5
replies
1.8k
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 9 months ago by
shepherl
4.2k • written 9 months ago by
azm.ana2
• 0
0
votes
0
replies
456
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
9 months ago
Maria Doyle
▴ 100
0
votes
0
replies
276
views
News:
Announcing the GBCC2025 Logo Design Winner!
Community
Conference
GBCC2025
Bioconductor
9 months ago
Maria Doyle
▴ 100
1
vote
0
replies
581
views
News:
Bioconductor Course, Kenya 2025: Applications Open!
Events
Community
Training
Africa
Bioconductor
9 months ago
Maria Doyle
▴ 100
0
votes
4
replies
2.2k
views
News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
written 2.6 years ago by
Maria Doyle
▴ 100
908 results • Page
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Comment: Extract snp information from genomic regions with biomaRt -> "oaries_snp"
by
tomaamylikefood
• 0
Using biomaRt to extract SNP information from genomic regions is as simple as setting the correct dataset in this case, and defining your …
Comment: Save the Date for EuroBioC2026 in Turku!
by
tomaamylikefood
• 0
If you re interested in staying productive and entertained while following updates from events like EuroBioC2026, you can Download free And…
Answer: Error installing Seqinfo
by
fabio.marroni
• 0
I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…
Comment: Getting a large intercept with DESeq2
by
Michael Love
43k
Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…
Comment: Getting a large intercept with DESeq2
by
James W. MacDonald
68k
As a trivial example, consider this: ``` > model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4)))) (Intercept) Tre…
Votes
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Issues with downloading biomaRt - SeqInfo and S4 Vectors
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
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