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Bioconductor
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News:
Bioconductor Board Nominations Open
TAB
Bioconductor
CAB
4 weeks ago • updated 12 days ago
shepherl
4.2k
0
votes
0
replies
105
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 3 days ago by
Michael Love
43k • written 4 weeks ago by
Sabina
• 0
0
votes
0
replies
118
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
5 weeks ago
Wei Shi
★ 3.6k
0
votes
3
replies
2.1k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma
Bioconductor
Metabolomics
updated 6 weeks ago by
Gordon Smyth
52k • written 6 weeks ago by
anni
• 0
0
votes
2
replies
904
views
Starting with a clean bioconductor rstudio container
Bioconductor
updated 7 weeks ago by
ATpoint
★ 4.9k • written 8 weeks ago by
Ramiro
• 0
0
votes
9
replies
13k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 10 weeks ago by
Hadi
• 0 • written 4.0 years ago by
charlotte
▴ 10
0
votes
0
replies
194
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
10 weeks ago
Gordon Smyth
52k
0
votes
3
replies
8.1k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 14 days ago by
braxtonangelic97
• 0 • written 23 months ago by
Aytaç
• 0
0
votes
1
reply
416
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 9 weeks ago by
Brian
• 0 • written 12 weeks ago by
Maria Doyle
▴ 100
0
votes
1
reply
346
views
Best tximport quant.genes.sf
tximport
tximeta
Bioconductor
updated 3 months ago by
ATpoint
★ 4.9k • written 3 months ago by
yob4003
• 0
0
votes
2
replies
757
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 4 months ago by
XFWu
• 0
1
vote
5
replies
1.7k
views
Package developing and interoperation with Bioconductor
Package
Bioconductor
written 4 months ago by
slizchap
• 0
0
votes
8
replies
2.1k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
updated 16 hours ago by
rajilrfaze
• 0 • written 18 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
631
views
News:
List of Deprecated Packages for Bioc3.20
Release
Devel
Bioconductor
10 months ago • updated 4 months ago
shepherl
4.2k
0
votes
0
replies
416
views
News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
Community
Conference
Bioconductor
5 months ago
Maria Doyle
▴ 100
0
votes
6
replies
1.7k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
updated 3 months ago by
eilishhill8
• 0 • written 2.5 years ago by
Maria Doyle
▴ 100
0
votes
3
replies
582
views
batch effect removal for agilent microarray data
"
"Bioconductor"
Bioconductor
6 months ago • updated 5 months ago
gaye.yilmaz
• 0
0
votes
0
replies
364
views
Job:
Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
6 months ago
Wolfgang Huber
★ 13k
0
votes
5
replies
1.6k
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 6 months ago by
shepherl
4.2k • written 6 months ago by
azm.ana2
• 0
0
votes
0
replies
294
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
6 months ago
Maria Doyle
▴ 100
0
votes
0
replies
219
views
News:
Announcing the GBCC2025 Logo Design Winner!
Community
Conference
GBCC2025
Bioconductor
6 months ago
Maria Doyle
▴ 100
1
vote
0
replies
495
views
News:
Bioconductor Course, Kenya 2025: Applications Open!
Events
Community
Training
Africa
Bioconductor
6 months ago
Maria Doyle
▴ 100
0
votes
4
replies
2.1k
views
News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
updated 4 weeks ago by
Esperan
• 0 • written 2.3 years ago by
Maria Doyle
▴ 100
0
votes
2
replies
529
views
Build error on kunpeng2 Linux aarch64
Bioconductor
updated 7 months ago by
wise
• 0 • written 8 months ago by
Hongxiang
• 0
2
votes
1
reply
740
views
bioconductor packages on bioconda
Bioconductor
updated 8 months ago by
James W. MacDonald
68k • written 8 months ago by
risch.vinzent
• 0
1
vote
3
replies
928
views
Allele frequencies for ALL alleles of one SNP ?
Bioconductor
9 months ago
Abiologist
• 0
10
votes
7
replies
2.2k
views
Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 9 months ago by
shepherl
4.2k • written 2.5 years ago by
L
▴ 50
1
vote
0
replies
1.1k
views
News:
Bioconductor 3.20 is Released!
Bioconductor
Release
Software
9 months ago
shepherl
4.2k
0
votes
0
replies
469
views
News:
Announcing the GBCC2025 Logo Design Contest!
Conference
Community
Galaxy
GBCC2025
Bioconductor
9 months ago
Maria Doyle
▴ 100
1
vote
3
replies
1.1k
views
Tutorial regarding metabolomics with R
Bioconductor
Metabolomics
xcms
updated 9 months ago by
James W. MacDonald
68k • written 9 months ago by
abhisek001
• 0
1
vote
2
replies
941
views
DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2
Bioconductor
updated 10 months ago by
Michael Love
43k • written 11 months ago by
JT
▴ 10
0
votes
0
replies
450
views
News:
Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries
Community
Teaching
Bioconductor
10 months ago
Maria Doyle
▴ 100
2
votes
9
replies
1.6k
views
Can't post a question?
Bioconductor
updated 5 months ago by
DavideSant
• 0 • written 10 months ago by
blmurphy
• 0
2
votes
2
replies
703
views
How to read OSCA book?
BIOCON
OSCA
Bioconductor
11 months ago
zr
• 0
1
vote
2
replies
686
views
WARNING: No Bioconductor dependencies detected.
Bioconductor
Biocon
11 months ago
katja.danielzik
• 0
0
votes
3
replies
789
views
concentration tables suitable as input for new packages?
Bioconductor
written 11 months ago by
katja.danielzik
• 0
2
votes
0
replies
899
views
News:
Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025
Conference
Bioconductor
Community
11 months ago
Maria Doyle
▴ 100
0
votes
5
replies
1.3k
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor
clusterProfiler
updated 10 months ago by
Lluís Revilla Sancho
▴ 760 • written 11 months ago by
semra
• 0
0
votes
3
replies
1.9k
views
News:
Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference
Bioconductor
Community
updated 12 weeks ago by
nytwordlehints
• 0 • written 11 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
1.9k
views
Unable to install/use limma
limma
Bioconductor
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
Jennifer
• 0
1
vote
2
replies
605
views
Review process for delivering R packages
Bioconductor
11 months ago
XFWu
• 0
0
votes
1
reply
665
views
News:
BioCAsia 2024 Registration Now Open!
BioCAsia2024
Conference
Community
Bioconductor
11 months ago
Maria Doyle
▴ 100
1
vote
3
replies
1.4k
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER
GenomeInfoDbData
Bioconductor
GenomeInfoDb
written 11 months ago by
dbjohnson7
• 0
0
votes
0
replies
618
views
Job:
PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS
AI
Bioconductor
updated 11 months ago by
Tyler Sagendorf
▴ 10 • written 12 months ago by
Gerhard Thallinger
▴ 180
0
votes
0
replies
464
views
BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024
Community
Conference
Bioconductor
12 months ago
Maria Doyle
▴ 100
0
votes
0
replies
582
views
News:
EuroBioC Updates: Important Deadlines
Conference
EuroBioC2024
Bioconductor
Community
EuroBioC
12 months ago
Maria Doyle
▴ 100
2
votes
4
replies
753
views
Bioconductor Submission question
Bioconductor
12 months ago
XFWu
• 0
0
votes
0
replies
478
views
News:
Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB
CAB
Bioconductor
12 months ago
shepherl
4.2k
0
votes
0
replies
457
views
EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community
Conference
Bioconductor
EuroBioC2024
12 months ago
Maria Doyle
▴ 100
0
votes
4
replies
1.1k
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts
Subread
Bioconductor
13 months ago • updated 12 months ago
Jessica
• 0
880 results • Page
1 of 18
Recent ...
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Comment: p-adjusted values in multiple comparisons
by
Gordon Smyth
52k
plotMDS() is best run on the original DGEList object, i.e., on the input to voom rather than on the output. See the example analyses in the…
Comment: EuroBioC2024 abstract submission is open!
by
rajilrfaze
• 0
[Sportzfy smooth streaming APK][1] ensures zero buffering during your favorite games. [1]: https://sportzfytvapk.com.co/
Comment: p-adjusted values in multiple comparisons
by
ocanorocabayera
• 0
Thank you Gordon for your thorough reply. It seems when MDS-plotting the obtained object from 'voom', that the points do not cluster togeth…
Comment: Are voomByGroup and voomLmFit compatible?
by
Gordon Smyth
52k
Not sure what "points" you are referring to, or what you mean by them being "weighted".
Answer: p-adjusted values in multiple comparisons
by
Gordon Smyth
52k
If your data was completely random, with no truly differentially expressed (DE) genes, then you would expect to get nearly 5% of the p-valu…
Votes
Answer: p-adjusted values in multiple comparisons
Comment: Very different log2 Fold changes with DESeq2 and explict calculation
Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
Answer: Very different log2 Fold changes with DESeq2 and explict calculation
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