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Bioconductor
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News:
Opportunity to host EuroBioC2026 Preconference workshops!
Conference
Workshop
Bioconductor
3 days ago
laurah ondari
• 0
0
votes
0
replies
92
views
News:
EuroBioC2026 abstract submission is open!
Conference
Bioconductor
23 days ago
laurah ondari
• 0
3
votes
5
replies
453
views
upstream git branches of bioc-release
Bioconductor
written 26 days ago by
Jeroen
▴ 10
0
votes
1
reply
377
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 29 days ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
Sabina
• 0
0
votes
2
replies
456
views
After running samtools, the featureCounts command crashed.
RNASeqData
Bioconductor
RNASeq
updated 20 days ago by
MarcHintz99
• 0 • written 3 months ago by
Rui
• 0
0
votes
1
reply
517
views
Problem with the TMB plot
Bioconductor
updated 4 weeks ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
nayanajose
• 0
2
votes
3
replies
515
views
DESeq2 design for haplotype MPRA
Bioconductor
written 9 weeks ago by
Rita
• 0
0
votes
0
replies
278
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor
SpliceWiz
updated 4 weeks ago by
Kevin Blighe
★ 4.0k • written 3 months ago by
jalte.jelsing
• 0
0
votes
2
replies
195
views
Alternative to BrainArray custom CDF packages for Affymetrix chips?
Bioconductor
updated 4 weeks ago by
Guido Hooiveld
★ 4.1k • written 5 weeks ago by
Stephen Piccolo
▴ 600
1
vote
0
replies
84
views
News:
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
5 weeks ago
Maria Doyle
▴ 110
0
votes
2
replies
287
views
featureCounts -L: high unassigned:mapq fraction
Bioconductor
written 11 weeks ago by
sikora
• 0
1
vote
2
replies
449
views
Streamlining the computing time for MiloDE p-value correction in large dataset?
SingleCellExperiment
edgeR
miloR
Bioconductor
updated 6 weeks ago by
Kevin Blighe
★ 4.0k • written 11 weeks ago by
Joseph
• 0
1
vote
2
replies
391
views
incomplete imputation of missing values with LEA impute() function
Bioconductor
LEA
updated 6 weeks ago by
Kevin Blighe
★ 4.0k • written 11 weeks ago by
nadia
• 0
2
votes
2
replies
531
views
What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
11 weeks ago • updated 5 weeks ago
Matthew Thornton
▴ 390
0
votes
3
replies
273
views
Integration: Paired-end vs healthy single-end from a different source
Bioconductor
written 6 weeks ago by
m.c.ruma
• 0
1
vote
4
replies
420
views
"Watched Tags" are being erased rather than updated
Bioconductor
updated 4 weeks ago by
RalphSavage99
• 0 • written 7 weeks ago by
jessica.anderson
▴ 10
0
votes
1
reply
239
views
Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
updated 6 weeks ago by
Michael Love
43k • written 10 weeks ago by
acharyapratiksha24
• 0
0
votes
7
replies
2.1k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
written 2.8 years ago by
Maria Doyle
▴ 110
0
votes
0
replies
12
views
Spam:
The Neon Code PolyTrack
Bioconductor
7 weeks ago
residentialplayt
0
2
votes
1
reply
272
views
News:
Bioconductor 3.22 Released!
release
Release
Bioconductor
Software
written 7 weeks ago by
shepherl
4.2k
0
votes
1
reply
160
views
News:
Save the Date: BioC2026
Bioconductor
written 7 weeks ago by
shepherl
4.2k
0
votes
3
replies
261
views
Using DESeq2 for age prediction
Bioconductor
updated 7 weeks ago by
ATpoint
★ 5.0k • written 8 weeks ago by
picasa1983
• 0
4
votes
3
replies
618
views
DESeq2 for candidate gene analysis
Bioconductor
written 3 months ago by
piffelpaff
▴ 20
0
votes
3
replies
296
views
"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
Bioconductor
9 weeks ago
ubjw24
• 0
0
votes
3
replies
442
views
NA values for DESeq2 p-values and adjusted p-values using large sample sizes
Bioconductor
11 weeks ago • updated 9 weeks ago
Gabriel
• 0
0
votes
1
reply
171
views
Gatins Set error
flowCore
Bioconductor
updated 11 weeks ago by
James W. MacDonald
68k • written 11 weeks ago by
yoav.lubelsky
• 0
0
votes
1
reply
236
views
Job:
Senior Teaching Fellow (MSc Computational Biomedicine)
Bioconductor
written 11 weeks ago by
s.samarajiwa
• 0
0
votes
1
reply
456
views
News:
Bioconductor 3.22 Release Schedule
Devel
Release
Bioconductor
written 3 months ago by
shepherl
4.2k
1
vote
2
replies
356
views
Error Loading Experiment from SimBenchData Package
Bioconductor
12 weeks ago • updated 10 weeks ago
ksankaran
• 0
0
votes
3
replies
353
views
Sharing a collection of datasets in ExperimentHub
Bioconductor
updated 11 weeks ago by
Aaron Lun
★ 29k • written 12 weeks ago by
Stephen Piccolo
▴ 600
0
votes
6
replies
508
views
GO.db and others package Download failure
GO.db
Bioconductor
updated 3 months ago by
James W. MacDonald
68k • written 3 months ago by
Skyler
• 0
0
votes
1
reply
205
views
Job:
Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
written 3 months ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
384
views
News:
Bioconductor Board Nominations Open
TAB
Bioconductor
CAB
written 5 months ago by
shepherl
4.2k
0
votes
0
replies
235
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
5 months ago
Wei Shi
★ 3.6k
0
votes
3
replies
2.4k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma
Bioconductor
Metabolomics
updated 5 months ago by
Gordon Smyth
53k • written 5 months ago by
anni
• 0
0
votes
2
replies
1.1k
views
Starting with a clean bioconductor rstudio container
Bioconductor
updated 6 months ago by
ATpoint
★ 5.0k • written 6 months ago by
Ramiro
• 0
0
votes
9
replies
13k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 6 months ago by
Hadi
• 0 • written 4.4 years ago by
charlotte
▴ 10
0
votes
0
replies
352
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
6 months ago
Gordon Smyth
53k
0
votes
4
replies
8.9k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
written 2.3 years ago by
Aytaç
• 0
0
votes
2
replies
585
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 4 months ago by
Liona
• 0 • written 7 months ago by
Maria Doyle
▴ 110
0
votes
1
reply
475
views
Best tximport quant.genes.sf
tximport
tximeta
Bioconductor
updated 7 months ago by
ATpoint
★ 5.0k • written 7 months ago by
yob4003
• 0
0
votes
2
replies
839
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 8 months ago by
XFWu
• 0
1
vote
5
replies
1.8k
views
Package developing and interoperation with Bioconductor
Package
Bioconductor
written 8 months ago by
slizchap
• 0
0
votes
5
replies
2.7k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
written 22 months ago by
Maria Doyle
▴ 110
0
votes
1
reply
881
views
News:
List of Deprecated Packages for Bioc3.20
Release
Devel
Bioconductor
14 months ago • updated 8 months ago
shepherl
4.2k
0
votes
0
replies
569
views
News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
Community
Conference
Bioconductor
10 months ago
Maria Doyle
▴ 110
0
votes
3
replies
690
views
batch effect removal for agilent microarray data
"
"Bioconductor"
Bioconductor
10 months ago
gaye.yilmaz
• 0
0
votes
0
replies
618
views
Job:
Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
10 months ago
Wolfgang Huber
★ 13k
0
votes
5
replies
1.9k
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 10 months ago by
shepherl
4.2k • written 10 months ago by
azm.ana2
• 0
0
votes
0
replies
502
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
10 months ago
Maria Doyle
▴ 110
911 results • Page
1 of 19
Recent ...
Replies
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
gexose2839
• 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
aqeel
• 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Gordon Smyth
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