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Showing :
Biomart
•
reset
0
votes
2
replies
60
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db
biomaRt
written 19 hours ago by
landenshanie
▴ 40
0
votes
0
replies
48
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
3 days ago • updated 2 days ago
Abiologist
• 0
1
vote
0
replies
75
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
7 days ago
Aleena
▴ 30
1
vote
3
replies
195
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 4 weeks ago by
James W. MacDonald
66k • written 4 weeks ago by
bas_work
▴ 30
2
votes
2
replies
232
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 4 weeks ago by
James W. MacDonald
66k • written 4 weeks ago by
sansan
• 0
0
votes
1
reply
170
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 7 weeks ago by
James W. MacDonald
66k • written 7 weeks ago by
Reeya
• 0
0
votes
1
reply
332
views
error in mapIds function
mapIds
biomaRt
updated 12 weeks ago by
Marcel Ramos
700 • written 12 weeks ago by
Regina
• 0
0
votes
2
replies
495
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
3 months ago
eefernan5
• 0
1
vote
1
reply
249
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 3 months ago by
Robin
• 0 • written 3 months ago by
Pez
▴ 10
0
votes
1
reply
240
views
biomaRt issue
biomaRt
updated 3 months ago by
Mike Smith
★ 6.5k • written 3 months ago by
Fariz
• 0
1
vote
5
replies
496
views
BiomaRt download data error
biomaRt
updated 3 months ago by
Mike Smith
★ 6.5k • written 3 months ago by
Max Bone
• 0
6
votes
9
replies
875
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 3 months ago by
alexander3
• 0 • written 3 months ago by
Amparo
• 0
1
vote
1
reply
479
views
Error with biomaRt
biomaRt
updated 4 months ago by
Mike Smith
★ 6.5k • written 4 months ago by
goldenboy
• 0
4
votes
2
replies
406
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 4 months ago by
Guido Hooiveld
★ 4.0k • written 4 months ago by
sansan
• 0
2
votes
2
replies
687
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
4 months ago
bd2000
▴ 30
1
vote
0
replies
243
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
4 months ago
Benjamin
▴ 30
0
votes
2
replies
421
views
Problem with loading ensembl version 105.
biomaRt
5 months ago
RC
• 0
0
votes
1
reply
763
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 5 months ago by
James W. MacDonald
66k • written 5 months ago by
ai.yaku
• 0
0
votes
3
replies
434
views
Obtaining rsIDs with ENSG and variant ID information
rsid
biomaRt
updated 5 months ago by
Robert Castelo
★ 3.3k • written 5 months ago by
bd2000
▴ 30
4
votes
12
replies
1.0k
views
Ensembl down???
biomaRt
5 months ago
bas_work
▴ 30
3
votes
2
replies
456
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
6 months ago • updated 5 months ago
henrydionne
▴ 10
1
vote
2
replies
715
views
How to find stop codons for a list of genes
stopcodon
biomaRt
6 months ago
Marek Gierlinski
▴ 30
0
votes
10
replies
853
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
6 months ago • updated 11 weeks ago
ScafioRuo
• 0
11
votes
10
replies
7.5k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 8 weeks ago by
juo5
• 0 • written 6 months ago by
Abhishek
▴ 20
0
votes
3
replies
497
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
Marilyn
• 0
1
vote
4
replies
701
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago
andrew.b.kleist
▴ 10
0
votes
2
replies
390
views
Biomart - upstream region of 'coding'
biomaRt
updated 8 months ago by
Mike Smith
★ 6.5k • written 8 months ago by
andrebolerbarros
▴ 20
0
votes
0
replies
399
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
9 months ago
ali.oghabian
• 0
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG
DESeq2
biomaRt
clusterProfiler
org.Mm.eg.db
updated 9 months ago by
Guido Hooiveld
★ 4.0k • written 9 months ago by
Milan
▴ 10
1
vote
5
replies
632
views
Errors with makeTxDbFromBiomart
biomaRt
updated 9 months ago by
James W. MacDonald
66k • written 9 months ago by
Jerina
▴ 10
1
vote
2
replies
643
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
10 months ago
Miguel
• 0
0
votes
3
replies
813
views
Error with makeTxDbFromBiomart
DEXSeq
biomaRt
updated 9 months ago by
Hervé Pagès
16k • written 10 months ago by
anavmar1
• 0
0
votes
1
reply
639
views
Trouble using biomaRt to pull pathway genes from GO
GO
biomaRt
updated 10 months ago by
James W. MacDonald
66k • written 10 months ago by
cstorer
• 0
0
votes
1
reply
1.6k
views
News:
News:Ensembl 110 has been released
ensembldb
biomaRt
updated 10 months ago by
Michael Love
42k • written 10 months ago by
Benjamin
▴ 30
2
votes
4
replies
982
views
Use with_go along with other filters in getBM function
Annotation
biomaRt
12 months ago • updated 11 months ago
RuBBiT0
▴ 10
1
vote
2
replies
828
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by
Mike Smith
★ 6.5k • written 12 months ago by
Yijing
• 0
0
votes
1
reply
852
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by
RuBBiT0
▴ 10 • written 12 months ago by
Yijing
• 0
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 13 months ago by
nhaus
▴ 30
0
votes
3
replies
1.0k
views
Problem installing biomaRt on mac
biomaRt
mac
updated 9 months ago by
15753563659
▴ 50 • written 18 months ago by
alfonsosaera
• 0
7
votes
6
replies
4.3k
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 7 months ago by
Marcel Ramos
700 • written 21 months ago by
Recep
▴ 20
7
votes
5
replies
7.1k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 7 months ago by
Ke
• 0 • written 2.1 years ago by
kieran.short
▴ 40
22
votes
15
replies
7.6k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt
RNASeqData
R
updated 6 months ago by
Marie
▴ 10 • written 2.1 years ago by
Dina
▴ 50
1
vote
7
replies
4.6k
views
Problems Installing biomaRt
biomaRt
updated 6 months ago by
James W. MacDonald
66k • written 2.1 years ago by
ksci
▴ 20
0
votes
1
reply
993
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 2.5 years ago by
Lillian
• 0
4
votes
4
replies
1.8k
views
biomaRt error: database disk image is malformed
biomaRt
updated 11 months ago by
Emile
• 0 • written 2.6 years ago by
victorcampos1995
▴ 10
3
votes
3
replies
9.6k
views
How to find rsID with biomaRt in R
biomaRt
updated 3 months ago by
James W. MacDonald
66k • written 3.2 years ago by
Federica
▴ 10
5
votes
4
replies
9.9k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 10 months ago by
James W. MacDonald
66k • written 3.8 years ago by
Mahan
• 0
1
vote
4
replies
1.2k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 8 weeks ago by
James W. MacDonald
66k • written 4.1 years ago by
RJW63
• 0
0
votes
2
replies
710
views
biomart not ound some prevous release
biomart
rnaseq
written 5.3 years ago by
jarod_v6@libero.it
▴ 40
49 results • Page
1 of 1
Recent ...
Replies
Comment: ChAMP installation issue
by
Tahirah
• 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
James W. MacDonald
66k
Yes, you can use `limma`.
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Awards
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Mike Smith
★ 6.5k
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to
mohammedtoufiq91
▴ 10
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to
Gordon Smyth
50k
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to
bas_work
▴ 30
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landenshanie
▴ 40
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