Showing : CDF • reset
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crlmm: CDF for Infinium Global Diversity Array By Illumina
globaldiversityarray cdf crlmm
6 weeks ago mayra.haedo • 0
0
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1
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831
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rma normalization using microarray data
cdf
updated 16 months ago by 65k • written 16 months ago by • 0
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2
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1.3k
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3' microarray data using Affy - can't find cdf file, please help!
Affy microarray cdf
updated 4.4 years ago by 65k • written 4.4 years ago by • 0
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1
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934
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Still Not Recognizing CDF
affy CDF
4.5 years ago ekl • 0
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4
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936
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CDF still not found
CDF Package
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
1
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5
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1.7k
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CDf files in R
affy CDF
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
2
votes
5
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1.2k
views
Error in get(cdfname, object 'mm430mmentrezgcdf' not found
affy cdf rma
updated 5.5 years ago by ★ 3.9k • written 5.5 years ago by • 0
0
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1
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1.7k
views
Error in exprs(object)[index, , drop = FALSE] : subscript out of bounds while using GCRMA
gcrma wheatcdf cdf
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
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0
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1.5k
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creating custom cdf file
annotation cdf
5.9 years ago obaloglu • 0
2
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2
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2.7k
views
Issue with 'Could not obtain CDF environment' after attempting to extract information out of an AffyBatch object
Affy cdf .cel
updated 6.1 years ago by 65k • written 6.1 years ago by • 0
0
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4
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1.5k
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How to make custom CDF file for Clariom D human chip
clariom D CDF
updated 6.1 years ago by ★ 3.9k • written 6.1 years ago by ▴ 10
0
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2
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2.5k
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Processing array with R
cdf software error affy R
updated 6.3 years ago by 65k • written 6.3 years ago by • 0
0
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0
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1.1k
views
segfault when trying to convert hta20_Hs_ENSE_22.cdf to binary format
affxparser cdf hta2.0
6.9 years ago relathman ▴ 20
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1.1k
views
Minfi reading command error
minfi error command read.metharray.exp cdf
6.9 years ago niutster • 0
1
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3
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3.0k
views
How to analyse clariom d human files
limma pdinfobuilder affy cdf
7.1 years ago yusuf.khan ▴ 10
0
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4
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1.5k
views
huex10stv2cdf annotation file needed
cdf microarray affy
updated 7.2 years ago by 65k • written 7.2 years ago by ▴ 40
0
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1
reply
917
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Custom cdf files and genes
cdf microarray r3.2.2
updated 7.3 years ago by 65k • written 7.3 years ago by • 0
0
votes
4
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1.2k
views
Could you give me some suggestions for update Affy .cdf file
cdf affy microarray
7.8 years ago cmzuo13 • 0
0
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2
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1.7k
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How to use cdf version20 with oligo package
oligo cdf
updated 8.3 years ago by 65k • written 8.3 years ago by ▴ 10
0
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5
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2.5k
views
Load CDF files for Affymetrix ST 2.0 microarrays
microarray oligo cdf customcdf
updated 8.4 years ago by ★ 3.9k • written 8.4 years ago by ▴ 20
2
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3
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1.8k
views
i need AGI code as my probset
affy cdf probe
8.4 years ago • updated 8.2 years ago Angel ▴ 40
1
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1
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1.1k
views
altcdfenvs get wrapCdfEnvAffy error
software error microarray cdf
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 930
3
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7
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4.3k
views
miRNA microarray analysis
microarray cdf
updated 9.1 years ago by 50k • written 9.1 years ago by ▴ 10
0
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1
reply
2.9k
views
Array Express HuGene-1_1-st-v1 CDF problem
cdf microarray affy
updated 9.1 years ago by 65k • written 9.1 years ago by • 0
2
votes
2
replies
1.3k
views
problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 9.4 years ago by 65k • written 9.4 years ago by • 0
0
votes
2
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2.1k
views
HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO hgu133plus2 cdf affy limma
updated 9.6 years ago by ★ 13k • written 9.6 years ago by ★ 13k
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5
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2.0k
views
Using custom CDF with 'make.cdf.env'
miRNA cdf probe miRNA cdf probe
updated 9.7 years ago by ▴ 130 • written 9.7 years ago by ★ 13k
6
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2
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1.9k
views
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip?
miRNA cdf probe limma miRNA cdf probe limma
updated 9.6 years ago by 50k • written 9.7 years ago by ★ 13k
0
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1
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1.2k
views
Can't use package [pd.mapping250k.sty]
cdf cdf
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 70
0
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9
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2.7k
views
frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 9.8 years ago by ▴ 830 • written 9.8 years ago by ★ 13k
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4
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2.2k
views
.cel file processing is not working for an old array
cdf PROcess cdf PROcess
updated 9.8 years ago by 65k • written 9.8 years ago by ▴ 30
0
votes
4
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1.6k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 9.8 years ago by ★ 3.9k • written 9.8 years ago by 65k
0
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1
reply
1.3k
views
Error in Data.frame for mogene10stv1cdf and mogene10sttranscriptcluster.db
cdf cdf
updated 9.9 years ago by 65k • written 9.9 years ago by ▴ 50
0
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2
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3.7k
views
justRMA couldn't obtain CDF environment
cdf cdf
updated 9.9 years ago by 65k • written 9.9 years ago by ▴ 100
0
votes
2
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1.6k
views
makecdfenv package bug
cdf affy affxparser oligo cdf affy affxparser oligo
updated 9.9 years ago by ▴ 10 • written 9.9 years ago by 65k
0
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6
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1.5k
views
Package "makecdfenv"
cdf cdf
10.0 years ago James W. MacDonald 65k
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1.1k
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NaNs in RMA normalization of GSE31312
Normalization cdf Normalization cdf
10.0 years ago Guest User ★ 13k
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1
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1.7k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
cdf RankProd cdf RankProd
updated 10.0 years ago by ▴ 30 • written 10.0 years ago by ▴ 190
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1
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1.6k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 10.1 years ago by 65k • written 10.1 years ago by ★ 13k
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2
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2.2k
views
make.cdf.package Error in copySubstitute
GO cdf Biobase affy GO cdf Biobase affy
updated 10.1 years ago by 65k • written 10.1 years ago by ▴ 30
0
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1
reply
993
views
problem in making cdf package_makecdfenv
Microarray cdf Microarray cdf
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 130
0
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3
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1.8k
views
CRLMM Annotation file
SNP Annotation cdf SNP Annotation cdf
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 40
0
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8
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4.0k
views
error ReadAffy
Arabidopsis thaliana cdf affy gcrma PROcess oligo xps Arabidopsis thaliana cdf affy xps
updated 6.1 years ago by • 0 • written 10.2 years ago by ▴ 300
0
votes
1
reply
993
views
Problem with this package
cdf cdf
updated 10.3 years ago by 65k • written 10.3 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Error during installation packages
cdf cdf
updated 10.3 years ago by 65k • written 10.3 years ago by ▴ 70
0
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0
replies
1.8k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Annotation cdf makecdfenv miRNA Annotation cdf makecdfenv
10.3 years ago Isaac Neuhaus ▴ 360
0
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3
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2.0k
views
how to extract probes for a probeset from PdInfo database?
miRNA cdf affy miRNA cdf affy
updated 10.3 years ago by ★ 4.3k • written 10.3 years ago by ★ 3.9k
0
votes
0
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1.5k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA cdf affy makecdfenv affxparser miRNA cdf affy makecdfenv affxparser
10.3 years ago James W. MacDonald 65k
1
vote
4
replies
2.9k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 10.3 years ago by 65k • written 10.3 years ago by ★ 13k
0
votes
9
replies
2.4k
views
using frma and brainarray cdf on exon arrays
cdf affy PROcess oligo xps frma cdf affy PROcess oligo xps frma
updated 10.3 years ago by ▴ 590 • written 10.3 years ago by ▴ 100
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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