Showing : CGH • reset
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How to combine CGHcall objects
cghcall r cgh copy number
7.0 years ago kitcurtius • 0
5
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3
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1.6k
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Classes and methods for working with segmented copy number data
cgh copynumber
updated 7.1 years ago by 690 • written 7.8 years ago by 21k
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830
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problem in doing aCGH+SNP analysis
cgh
9.1 years ago kajayh • 0
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1
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1.5k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray Annotation CGH snapCGH Microarray Annotation CGH snapCGH
updated 9.8 years ago by 21k • written 9.8 years ago by ★ 13k
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analyses of CGH data
Microarray CGH Microarray CGH
10.6 years ago Isha Pandey Phd Scholar BITS Pilani Cam… ▴ 10
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1.3k
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Chr Info for array CGH - agilent 60K
CGH CGH
10.7 years ago Cian Murphy ▴ 40
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851
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snapCGH and clonesinfo
CGH limma snapCGH CGH limma snapCGH
10.9 years ago Juliet Hannah ▴ 360
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2
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2.4k
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Columns used by read.maimages for Agilent arrays
Annotation CGH limma
11.8 years ago • updated 6.6 years ago Gordon Smyth 50k
2
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3
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1.2k
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 6.6 years ago by 50k • written 11.8 years ago by ★ 1.5k
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1.3k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 280
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1
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1.4k
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CGHweb and cghFLasso
CGH CGH
updated 12.7 years ago by 6.7k • written 12.7 years ago by ▴ 80
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3
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2.5k
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Script to save plots in Pdf format ( DNAcopy)
CGH PROcess CGH PROcess
updated 13.1 years ago by ▴ 750 • written 13.1 years ago by ▴ 280
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1.5k
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seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
13.5 years ago Paul Shannon ★ 1.1k
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how to import Agilent CGH custom design xml file into limma
Normalization CGH probe limma Normalization CGH probe limma
13.6 years ago Sean Davis 21k
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1
reply
1.7k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 110
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2
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1.2k
views
memory limit
CGH trigger CGH trigger
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 100
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1
reply
1.4k
views
aCGH...'Genomic events'
CGH CGH
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 10
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1
reply
1.3k
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limma Agilent Normalization
Normalization CGH Normalization CGH
updated 13.9 years ago by 21k • written 13.9 years ago by ▴ 100
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CGHcall problem
CGH CGHcall CGH CGHcall
14.1 years ago Erik Dassi ▴ 10
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2
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1.5k
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Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 14.1 years ago by ▴ 450 • written 14.1 years ago by ▴ 80
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7
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1.4k
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CGH analysis without genome positions
CGH CGH
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 70
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1
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1.5k
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CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 14.3 years ago by ★ 2.9k • written 14.3 years ago by ★ 1.1k
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Calling genes present or absent in CGH data
CGH limma CGH limma
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 70
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1.2k
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
14.6 years ago Patrick Aboyoun ★ 1.6k
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problems with snapCGH readPositionalInfo processCGH
CGH snapCGH CGH snapCGH
14.7 years ago Dick Beyer ★ 1.4k
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1
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907
views
rtracklayer browserView
CGH rtracklayer CGH rtracklayer
14.7 years ago Giulio Di Giovanni ▴ 540
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general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
14.7 years ago Wolfgang RAFFELSBERGER ▴ 140
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1
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916
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NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 10
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error in runBioHMM() (package snapCGH)
CGH snapCGH CGH snapCGH
15.0 years ago Wolfgang Raffelsberger ▴ 160
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1
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819
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How to run bioHMM on Affymetrix data?
CGH CGH
updated 15.1 years ago by ▴ 550 • written 15.1 years ago by ▴ 30
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2
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1.1k
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How to display chromosome rapresentation ?
CGH impute CGH impute
updated 15.2 years ago by 21k • written 15.2 years ago by ▴ 540
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1
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1.0k
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Where to download annotation package for Agilent human CGH 44B
Annotation CGH Annotation CGH
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 190
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Annotation package for Agilent human CGH 44B
Annotation CGH Homo sapiens Annotation CGH Homo sapiens
15.3 years ago Daren Tan ▴ 190
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1.3k
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A CGH platform question
SNP Genetics Coverage CGH affy SNP Genetics Coverage CGH affy
updated 15.4 years ago by ★ 2.4k • written 15.4 years ago by ▴ 70
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1
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741
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CGH analysis in non-model organism
CGH CGH
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 30
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1.2k
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quality assessment and preprocessing for tiling array-based CGH data
CGH probe CGH probe
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 110
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Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
15.6 years ago Florian Markowetz ▴ 20
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987
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 15.6 years ago by ▴ 340 • written 15.6 years ago by ▴ 340
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1
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1.1k
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Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 15.7 years ago by 21k • written 15.7 years ago by ★ 1.9k
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snapCGH package - processCGH
CGH CGH
15.9 years ago Henrique Proença ▴ 80
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1.8k
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gains and losses via mode shifting
Cancer CGH Cancer CGH
15.9 years ago Oscar Rueda ▴ 60
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5
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1.2k
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gains and losses via mode shifting
CGH CGH
updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 830
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850
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Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
16.0 years ago mb23 ▴ 30
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906
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Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 30
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2
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1.1k
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cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by ▴ 70 • written 16.0 years ago by ▴ 30
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0
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978
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New Bioconductor package: rtracklayer
Sequencing Annotation CGH GenomeGraphs rtracklayer Sequencing Annotation CGH GenomeGraphs
16.0 years ago Michael Lawrence ▴ 620
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2
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862
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Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
updated 16.1 years ago by ▴ 340 • written 16.1 years ago by 21k
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636
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
16.1 years ago Sean Davis 21k
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1
reply
1.1k
views
array CGH - raw data analysis
CGH CGH
updated 16.2 years ago by 21k • written 16.2 years ago by ▴ 500
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1.3k
views
JOB: Microarray Bioinformatics Specialist
Microarray Cancer CGH cycle Microarray Cancer CGH cycle
16.2 years ago Robert Castelo ★ 3.3k
50 results • Page 1 of 1
Recent ...
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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