Bioconductor CRISPR

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CRISPR SingleCell Genomics

3.3 years ago lpinello • 0

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1.8k

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edger processamplicons sgrna crispr

updated 23 months ago by hyejo • 0 • written 6.9 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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independentfiltering DESeq2 CRISPR

4.0 years ago Rubén • 0

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2.5k

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crisprseek crispr gRNAefficacy grna

updated 4.4 years ago by Julie Zhu ★ 4.3k • written 4.4 years ago by Dawid G. Nowak ▴ 40

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CRISPR functional genomics single cell gene regulatory networks Job

4.5 years ago bauer ▴ 10

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1.3k

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Bioinformatics drug-discovery RNA-seq CRISPR Job

4.5 years ago yzhang • 0

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2.7k

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CRISPR

updated 5.4 years ago by Julie Zhu ★ 4.3k • written 5.5 years ago by sharvari gujja ▴ 40

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1.7k

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EdgeR CRISPR Barcode processamplicons

updated 6.7 years ago by sdalin • 0 • written 7.9 years ago by neggersjasper • 0

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2.5k

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crispr edger deseq deseq2

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by emanuelvgoncalves • 0

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1.5k

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R crispr fastq

8.2 years ago kfburbach • 0

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2.1k

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r crispr

updated 8.7 years ago by mousheng xu ▴ 10 • written 9.3 years ago by shane • 0

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crisprseek R CRISPR sgRNA

updated 9.0 years ago by Julie Zhu ★ 4.3k • written 9.0 years ago by alexgraehl ▴ 20

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4.7k

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crisprseek sgrna crispr cas9 R

9.3 years ago • updated 9.2 years ago alexgraehl ▴ 20

13 results • Page 1 of 1

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Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0

thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…

Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

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Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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