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CRISPR
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710
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Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
2.6 years ago
lpinello
• 0
0
votes
2
replies
1.5k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 14 months ago by
hyejo
• 0 • written 6.1 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.0k
views
Independent filtering of NGS data
independentfiltering
DESeq2
CRISPR
3.3 years ago • updated 3.2 years ago
Rubén
• 0
6
votes
14
replies
2.0k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 3.6 years ago by
Julie Zhu
★ 4.3k • written 3.7 years ago by
Dawid G. Nowak
▴ 40
1
vote
0
replies
922
views
Job:
Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR
functional genomics
single cell
gene regulatory networks
Job
3.7 years ago
bauer
▴ 10
0
votes
0
replies
980
views
Job:
Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics
drug-discovery
RNA-seq
CRISPR
Job
3.7 years ago
yzhang
• 0
0
votes
19
replies
2.2k
views
Help with using CRISPRseeker
CRISPR
updated 4.6 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
1.4k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 5.9 years ago by
sdalin
• 0 • written 7.1 years ago by
neggersjasper
• 0
0
votes
4
replies
2.1k
views
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr
edger
deseq
deseq2
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
emanuelvgoncalves
• 0
0
votes
2
replies
1.3k
views
How to start CrispRVariants with fastq file starting point
R
crispr
fastq
7.4 years ago
kfburbach
• 0
0
votes
6
replies
1.8k
views
Manipulating random CRISPR sequences
r
crispr
updated 7.9 years ago by
mousheng xu
▴ 10 • written 8.5 years ago by
shane
• 0
1
vote
1
reply
1.4k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.3 years ago by
alexgraehl
▴ 20
2
votes
27
replies
4.0k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
8.6 years ago • updated 8.5 years ago
alexgraehl
▴ 20
13 results • Page
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Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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