Showing : Celegans • reset
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Failed Construction of DESEQDataSet Object: C.Elegans
Celegans DESeq2 dds Errorinseq_len(length(idx)-1)
updated 2.1 years ago by 67k • written 2.1 years ago by • 0
1
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1
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1.2k
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Fail to install BSgenome and library
BSgenome Celegans
updated 2.7 years ago by 16k • written 2.7 years ago by • 0
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2
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1.9k
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Gviz: Add label/title to GenomeAxisTrack
Gviz celegans
updated 6.9 years ago by ▴ 750 • written 6.9 years ago by ▴ 10
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2
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1.7k
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Error in useMart while using a dataset in biomaRt
biomaRt bioconductor celegans annotation
updated 7.0 years ago by ★ 6.6k • written 7.0 years ago by • 0
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2
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899
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Celegans.db_2.3.5: Wormbase version
celegans affy convert celegans affy convert
updated 14.3 years ago by ★ 7.2k • written 14.3 years ago by ★ 4.3k
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1.1k
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concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]
Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans
updated 14.9 years ago by 21k • written 14.9 years ago by ★ 1.1k
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1.1k
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question regarding BSGenome/Biostrings
celegans Biostrings celegans Biostrings
updated 16.1 years ago by 16k • written 16.1 years ago by ▴ 210
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1.0k
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Limma: different numbers of duplicated spots
celegans celegans
17.8 years ago Gordon Smyth 52k
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829
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read.affybatch fails with DrosGenome1 chips
Microarray Cancer celegans drosgenome1 affy Microarray Cancer celegans drosgenome1 affy
21.3 years ago James W. MacDonald 67k
9 results • Page 1 of 1
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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0
Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…
Comment: PCA of different bacterial species by Jeremy • 0
Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…
Comment: RnBeads::combine() - error? by Urotree • 0
pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…
Comment: RnBeads::combine() - error? by Urotree • 0
![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…
Comment: RnBeads::combine() - error? by Urotree • 0
rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …
Votes
Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
scater/scran with TPMs from Salmon - counts?
A: Full length single-cell RNA-seq - tximport output for downstream analysis
Answer: Understanding tximport working with salmon outputs
Answer: enrichGOgradient color change
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