Bioconductor ColData

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875

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DESeq2 design coldata

updated 11 months ago by swbarnes2 ★ 1.4k • written 11 months ago by arfranco ▴ 130

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993

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ColData pheatmap DESeq2

written 21 months ago by dania.khalid • 0

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1.8k

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SingleCellExperiment colData rename

updated 2.1 years ago by Basti ▴ 780 • written 2.1 years ago by achoppe ▴ 10

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804

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BiSeq Coldata

4.8 years ago akhaira • 0

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2.0k

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deseq2 levels factor colData

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by ariel ▴ 20

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48k

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deseq2 coldata

updated 6.4 years ago by swbarnes2 ★ 1.4k • written 6.4 years ago by mjrarcher ▴ 10

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3.9k

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variantannotation coldata

updated 6.5 years ago by Valerie Obenchain ★ 6.8k • written 6.5 years ago by lvclark ▴ 10

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4.5k

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deseq2 coldata NA

updated 7 months ago by Michael Love 43k • written 6.7 years ago by t.kuilman ▴ 170

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1.8k

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multiassayexperiment colData

updated 7.3 years ago by Levi Waldron ★ 1.1k • written 7.3 years ago by Lluís Revilla Sancho ▴ 760

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Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

I am not sure this has anything to do with it but i had to run the following as tximport wouldn't allow me to import abundance_1.h5 files t…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1 2 3 Error in H5Dclose(h5dataset) : HDF5. Dataset. Unable to decrement reference count. ``` > traceback() 5: H5Dclose(h5dataset) 4: rhd…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0

Thanks, I figured it out.

Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati by Mei • 0

I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…

Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0

Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…

Votes

what the test method for enrichGO in clusterProfiler?

A: single-cells RNA-seq analysis by MAST with unbalanced group size

Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

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