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ColData
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0
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6
replies
1.3k
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 21 months ago by
swbarnes2
★ 1.4k • written 21 months ago by
arfranco
▴ 130
0
votes
2
replies
1.4k
views
Heat Map
ColData
pheatmap
DESeq2
written 2.6 years ago by
dania.khalid
• 0
0
votes
1
reply
2.2k
views
Rename colData column
SingleCellExperiment
colData
rename
updated 3.0 years ago by
Basti
▴ 780 • written 3.0 years ago by
achoppe
▴ 10
1
vote
0
replies
976
views
Understanding ColData in BiSeq
BiSeq
Coldata
5.7 years ago
akhaira
• 0
2
votes
2
replies
2.4k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
ariel
▴ 20
4
votes
8
replies
50k
views
What is colData? How do I make one?
deseq2
coldata
updated 7.2 years ago by
swbarnes2
★ 1.4k • written 7.2 years ago by
mjrarcher
▴ 10
1
vote
7
replies
4.8k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 7.3 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
lvclark
▴ 10
0
votes
8
replies
5.0k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 17 months ago by
Michael Love
43k • written 7.5 years ago by
t.kuilman
▴ 170
0
votes
3
replies
2.2k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 8.2 years ago by
Levi Waldron
★ 1.1k • written 8.2 years ago by
Lluís Revilla Sancho
▴ 760
9 results • Page
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Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
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