Bioconductor ColData

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691

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DESeq2 design coldata

updated 6 months ago by swbarnes2 ★ 1.4k • written 6 months ago by arfranco ▴ 130

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813

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ColData pheatmap DESeq2

written 17 months ago by dania.khalid • 0

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1.5k

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SingleCellExperiment colData rename

updated 21 months ago by Basti ▴ 780 • written 21 months ago by achoppe ▴ 10

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715

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BiSeq Coldata

4.5 years ago akhaira • 0

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1.8k

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deseq2 levels factor colData

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by ariel ▴ 20

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46k

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deseq2 coldata

updated 6.0 years ago by swbarnes2 ★ 1.4k • written 6.0 years ago by mjrarcher ▴ 10

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3.6k

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variantannotation coldata

updated 6.2 years ago by Valerie Obenchain ★ 6.8k • written 6.2 years ago by lvclark ▴ 10

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4.1k

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deseq2 coldata NA

updated 3 months ago by Michael Love 43k • written 6.3 years ago by t.kuilman ▴ 170

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1.7k

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multiassayexperiment colData

updated 7.0 years ago by Levi Waldron ★ 1.1k • written 7.0 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Comment: Struggle with the replicates of epic array data by Melisa Tecik • 0

Thanks you so much for the instructions. I also tried M values as you suggested but sadly the result was the same. Apparently, the problem …

Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

Votes

Answer: Struggle with the replicates of epic array data

Answer: bioconductor packages on bioconda

Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Awards • All

Scholar to James W. MacDonald 67k