Showing : DNAMethylation • reset
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Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
9 days ago • updated 3 days ago hortense96 • 0
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DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
22 days ago Macsue • 0
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6
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unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 15 days ago by ▴ 170 • written 24 days ago by • 0
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239
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Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation GO MethylationArray missMethyl EPICv2
updated 7 weeks ago by ▴ 40 • written 7 weeks ago by • 0
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Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest
updated 9 weeks ago by 65k • written 9 weeks ago by ▴ 10
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limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 10 weeks ago by 50k • written 11 weeks ago by ▴ 10
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Sample-specific methylation values using QSEA
DNAMethylation cfMeDIP-seq cfDNA qsea
updated 5 weeks ago by • 0 • written 11 weeks ago by • 0
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4
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EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
11 weeks ago mikat • 0
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486
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topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
12 months ago Grace • 0
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Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation ChAMP
updated 9 weeks ago by • 0 • written 3.4 years ago by • 0
10 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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