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DSS
•
reset
0
votes
2
replies
2.1k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS
bsseq
summarizedexperiment
8.7 years ago • updated 8.6 years ago
Tim Peters
▴ 180
2
votes
4
replies
2.0k
views
Error: could not find function "DMLtest"
dss
8.1 years ago
kafkaskid
▴ 20
0
votes
1
reply
1.4k
views
limma design matrix missing a Date column
limma
DSS
limma
DSS
updated 10.2 years ago by
James W. MacDonald
65k • written 10.2 years ago by
Sabet, Julia A
▴ 180
0
votes
6
replies
1.6k
views
limma complex contrast matrix
DSS
DSS
updated 13.1 years ago by
Ina Hoeschele
▴ 620 • written 13.1 years ago by
Prasad Siddavatam
▴ 150
0
votes
3
replies
1.7k
views
QuasiSeq vs DSS
RNASeq
Cancer
edgeR
DSS
RNASeq
Cancer
edgeR
DSS
updated 11.2 years ago by
Ryan C. Thompson
★ 7.9k • written 11.2 years ago by
Richard Friedman
★ 2.0k
1
vote
1
reply
1.3k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq
sva
DSS
updated 4.9 years ago by
keegan
▴ 60 • written 4.9 years ago by
gjl
▴ 10
0
votes
1
reply
728
views
Varying results from DSS when specifying different BSobj
DSS
DSS-single
bsseq
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
varunorama
• 0
1
vote
2
replies
1.1k
views
BUG: `showOneDMR` from DSS package creates wrong axis labels
DSS
3.4 years ago
vi.hammer
• 0
0
votes
7
replies
2.6k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis
ChAMP
DMP
DSS
updated 18 months ago by
James W. MacDonald
65k • written 24 months ago by
16301050225
• 0
1
vote
1
reply
234
views
Question about correction of confounders for EWAS
dss
DSS
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
chuanjiao6
• 0
0
votes
0
replies
728
views
DSS for non-CpG site analysis
DSS
methylation
4.6 years ago
CalM
• 0
2
votes
4
replies
1.3k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis
illuminaio
beadarray
DSS
bsseqData
2.2 years ago
Jojo
• 0
0
votes
0
replies
884
views
[DSS] callDMR - dis.merge option does not seem to be working
DSS
bug
troubleshooting
callDMR
4.4 years ago
matthew.kearney
• 0
0
votes
0
replies
733
views
DSS smoothing RRBS and strand collapse
DSS
BSSeq
4.1 years ago
stephanie.rialle
• 0
0
votes
1
reply
963
views
DMRfinder findDMRs.r Error - Argument is of length zero
DSS
DMRcaller
updated 11 months ago by
Noelia
• 0 • written 21 months ago by
Claire
• 0
3
votes
0
replies
704
views
DSS : Different results between DMLtest and DMLtest.multifactor
DSS
2.7 years ago
cer.chloe
▴ 30
0
votes
1
reply
1.0k
views
DSS DMLtest with different group sizes
DSS
7.7 years ago
aerval
• 0
0
votes
0
replies
1.3k
views
DSS CpG coverage threshold
DSS
WGBS
coverage
6.6 years ago
floriandeckert
▴ 30
0
votes
0
replies
880
views
DSS DMLtest Object features
DSS
DMLtest
6.1 years ago
floriandeckert
▴ 30
0
votes
0
replies
1.2k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS
dmltest
bayesian
statistics
methylation
6.1 years ago
floriandeckert
▴ 30
0
votes
0
replies
496
views
Confusing DSS outputs with smoothing (DMLtest)
DSS
13 months ago
Weisheng
• 0
21 results • Page
1 of 1
Recent ...
Replies
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Votes
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
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