Bioconductor Dss

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202

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dss DSS

updated 11 weeks ago by James W. MacDonald 65k • written 11 weeks ago by chuanjiao6 • 0

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478

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DSS

12 months ago Weisheng • 0

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940

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DSS DMRcaller

updated 11 months ago by Noelia • 0 • written 20 months ago by Claire • 0

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2.6k

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methylationArrayAnalysis ChAMP DMP DSS

updated 17 months ago by James W. MacDonald 65k • written 23 months ago by 16301050225 • 0

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1.2k

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

2.2 years ago Jojo • 0

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687

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DSS

2.6 years ago cer.chloe ▴ 30

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1.0k

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DSS

3.4 years ago vi.hammer • 0

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708

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DSS BSSeq

4.1 years ago stephanie.rialle • 0

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863

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DSS bug troubleshooting callDMR

4.4 years ago matthew.kearney • 0

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709

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DSS DSS-single bsseq

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by varunorama • 0

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716

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DSS methylation

4.6 years ago CalM • 0

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1.3k

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dmrseq sva DSS

updated 4.8 years ago by keegan ▴ 60 • written 4.9 years ago by gjl ▴ 10

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1.2k

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DSS dmltest bayesian statistics methylation

6.0 years ago floriandeckert ▴ 30

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854

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DSS DMLtest

6.1 years ago floriandeckert ▴ 30

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1.3k

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DSS WGBS coverage

6.5 years ago floriandeckert ▴ 30

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1.0k

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DSS

7.7 years ago aerval • 0

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2.0k

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dss

8.0 years ago kafkaskid ▴ 20

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2.1k

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DSS bsseq summarizedexperiment

8.6 years ago Tim Peters ▴ 170

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1.4k

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limma DSS limma DSS

updated 10.2 years ago by James W. MacDonald 65k • written 10.2 years ago by Sabet, Julia A ▴ 180

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1.7k

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RNASeq Cancer edgeR DSS RNASeq Cancer edgeR DSS

updated 11.1 years ago by Ryan C. Thompson ★ 7.9k • written 11.1 years ago by Richard Friedman ★ 2.0k

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1.6k

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DSS DSS

updated 13.1 years ago by Ina Hoeschele ▴ 620 • written 13.1 years ago by Prasad Siddavatam ▴ 150

21 results • Page 1 of 1

Recent ...

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Comment: DESeq2 setting significant p-value by Michael Love 41k

It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.

Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

Votes

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

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