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Deprecation
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3
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18
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4.8k
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News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
2.5 years ago • updated 20 months ago
shepherl
4.2k
0
votes
2
replies
1.6k
views
News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
2.7 years ago • updated 2.5 years ago
shepherl
4.2k
1
vote
8
replies
2.1k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 6.7 years ago by
shepherl
4.2k
0
votes
2
replies
1.3k
views
News:
List of Deprecated Packages for Bioc3.16
Release
Deprecation
Devel
Bioconductor
3.2 years ago • updated 3.1 years ago
shepherl
4.2k
0
votes
0
replies
1.3k
views
Running deprecated packages
ToPASeq
Deprecation
3.6 years ago
pgauthi1
• 0
0
votes
4
replies
1.8k
views
News:
List of Deprecated Packages for Bioc3.15
Devel
Deprecation
Release
Bioconductor
3.7 years ago • updated 3.2 years ago
shepherl
4.2k
0
votes
5
replies
2.1k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
4.2 years ago • updated 3.7 years ago
shepherl
4.2k
2
votes
2
replies
2.1k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
5.0 years ago • updated 4.6 years ago
shepherl
4.2k
0
votes
3
replies
1.5k
views
Which library now contains the ssdCoverage command that used to be found in the htseqtools package for R version 4.0.1 ?
Deprecation
chipseq
htseqtools
Bioconductor
updated 4.8 years ago by
Basti
▴ 780 • written 4.8 years ago by
Mick
• 0
0
votes
0
replies
1.4k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.8 years ago
shepherl
4.2k
0
votes
1
reply
1.3k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
6.0 years ago • updated 5.9 years ago
shepherl
4.2k
0
votes
0
replies
1.3k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
6.1 years ago
shepherl
4.2k
0
votes
2
replies
2.6k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
6.2 years ago • updated 6.1 years ago
shepherl
4.2k
0
votes
0
replies
1.4k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
6.3 years ago • updated 6.2 years ago
shepherl
4.2k
0
votes
1
reply
1.4k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
6.4 years ago • updated 6.3 years ago
shepherl
4.2k
0
votes
3
replies
1.6k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
6.5 years ago
shepherl
4.2k
0
votes
1
reply
1.3k
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
6.6 years ago
shepherl
4.2k
17 results • Page
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Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
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▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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