2.6 years ago • updated 21 months ago
shepherl
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written 6.8 years ago by
shepherl
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4.3 years ago • updated 3.7 years ago
shepherl
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5.1 years ago • updated 4.7 years ago
shepherl
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2.8 years ago • updated 2.6 years ago
shepherl
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6.3 years ago • updated 6.2 years ago
shepherl
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6.5 years ago • updated 6.4 years ago
shepherl
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6.0 years ago
shepherl
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6.7 years ago
shepherl
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3.2 years ago
shepherl
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6.6 years ago
shepherl
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6.4 years ago • updated 6.3 years ago
shepherl
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6.2 years ago
shepherl
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5.9 years ago
shepherl
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3.8 years ago • updated 3.2 years ago
shepherl
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3.7 years ago
pgauthi1
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Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
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Gordon Smyth
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limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
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@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
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Gordon Smyth
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Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
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JKim
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Hi Emily,
He left some comments regarding normalization. Here is the relevant quote:
> The EList object produced by dpcQuant(), containi…
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