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EpicV2
•
reset
1
vote
2
replies
1.3k
views
CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2
EPICv2manifest
7 months ago
Joshua Llano
• 0
2
votes
7
replies
3.9k
views
Annotation for EPICv2
EpicV2
ChAMPdata
updated 11 months ago by
icecreamlover
• 0 • written 12 months ago by
nurkenber
• 0
1
vote
9
replies
3.7k
views
Error using champ.import
ChAMP
EPICv2
updated 12 months ago by
Ricky
• 0 • written 2.3 years ago by
medha.suman
• 0
0
votes
0
replies
430
views
DMRcate pcutoff setting
EpicV2
DMRcate
12 months ago
kitzhu
• 0
1
vote
4
replies
2.3k
views
SeSAMe DMR for EPIC V2
sesame
EPICv2manifest
epicv2
updated 3 months ago by
MargaretJDinan
• 0 • written 16 months ago by
luca.s
▴ 50
0
votes
4
replies
2.3k
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData
EPICv2
EPICv1
updated 4 months ago by
Mancy
• 0 • written 16 months ago by
archibold.mposhi
• 0
3
votes
2
replies
1.1k
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 17 months ago by
Gordon Smyth
53k • written 17 months ago by
Kim
• 0
1
vote
3
replies
2.1k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
19 months ago • updated 13 months ago
s.malik
• 0
0
votes
4
replies
2.3k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
rae.alshammari
▴ 20
0
votes
4
replies
3.4k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 11 months ago by
icecreamlover
• 0 • written 21 months ago by
ChunkyJones
• 0
3
votes
5
replies
2.2k
views
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame
IlluminaHumanMethylationEPICv2anno.20a1.hg38
methylationEPICv2.0
EpicV2
updated 19 months ago by
aldea85
• 0 • written 23 months ago by
Courtney
▴ 10
1
vote
6
replies
3.3k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 2.1 years ago by
Zuguang Gu
▴ 290 • written 2.2 years ago by
Izabela.ams
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: Interpretation of output of AffyRNAdeg and hist commands
by
debasainalsa
• 0
When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …
Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Votes
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
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