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EpicV2
•
reset
1
vote
2
replies
1.3k
views
CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2
EPICv2manifest
6 months ago
Joshua Llano
• 0
2
votes
7
replies
3.9k
views
Annotation for EPICv2
EpicV2
ChAMPdata
updated 11 months ago by
icecreamlover
• 0 • written 11 months ago by
nurkenber
• 0
1
vote
9
replies
3.7k
views
Error using champ.import
ChAMP
EPICv2
updated 11 months ago by
Ricky
• 0 • written 2.3 years ago by
medha.suman
• 0
0
votes
0
replies
418
views
DMRcate pcutoff setting
EpicV2
DMRcate
11 months ago
kitzhu
• 0
1
vote
4
replies
2.3k
views
SeSAMe DMR for EPIC V2
sesame
EPICv2manifest
epicv2
updated 10 weeks ago by
MargaretJDinan
• 0 • written 15 months ago by
luca.s
▴ 50
0
votes
4
replies
2.3k
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData
EPICv2
EPICv1
updated 3 months ago by
Mancy
• 0 • written 15 months ago by
archibold.mposhi
• 0
3
votes
2
replies
1.1k
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 16 months ago by
Gordon Smyth
53k • written 17 months ago by
Kim
• 0
1
vote
3
replies
2.1k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
19 months ago • updated 12 months ago
s.malik
• 0
0
votes
4
replies
2.3k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
rae.alshammari
▴ 20
0
votes
4
replies
3.4k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 10 months ago by
icecreamlover
• 0 • written 21 months ago by
ChunkyJones
• 0
3
votes
5
replies
2.1k
views
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame
IlluminaHumanMethylationEPICv2anno.20a1.hg38
methylationEPICv2.0
EpicV2
updated 18 months ago by
aldea85
• 0 • written 22 months ago by
Courtney
▴ 10
1
vote
6
replies
3.3k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 2.0 years ago by
Zuguang Gu
▴ 290 • written 2.1 years ago by
Izabela.ams
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: incomplete imputation of missing values with LEA impute() function
by
Gordon Smyth
53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
Comment: Sharing a collection of datasets in ExperimentHub
by
Aaron Lun
★ 29k
FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
Comment: Error Loading Experiment from SimBenchData Package
by
ATpoint
★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups
by
Gordon Smyth
53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub
by
Peter Hickey
▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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