Showing : ExpressionData • reset
3
votes
2
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815
views
Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools limma ExpressionData RNASeq edgeR
9 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
568
views
Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 23 months ago by 43k • written 23 months ago by • 0
0
votes
2
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868
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Doubt about expression data as well as assay
GEOquery ExpressionData assay SummarizedExperiment ExpressionAtlas
updated 23 months ago by • 0 • written 23 months ago by • 0
3
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2
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799
views
please resolve the issue
gene ExpressionData
updated 24 months ago by 68k • written 24 months ago by • 0
1
vote
2
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3.9k
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R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 2.1 years ago by 52k • written 2.1 years ago by • 0
0
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3
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1.1k
views
expression data
ExpressionData ExpressionNormalizationWorkflow
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
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0
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729
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edgeR testing interactions between two factors while controlling for blocking factor
edgeR ExpressionData RNASeqData
2.9 years ago Mafalda • 0
0
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1
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947
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HSMMSingleCell metadata
ExperimentHubData ExpressionData CellDataSet RNASeqData
3.0 years ago karl.stamm ▴ 10
2
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2
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1.1k
views
Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 3.0 years ago by • 0 • written 3.0 years ago by ▴ 10
0
votes
3
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1.1k
views
Error in loading data set
ExpressionData
updated 3.1 years ago by ▴ 780 • written 3.1 years ago by • 0
0
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0
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691
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Gene expression changes in one condition
RNASeq Gene ExpressionData
3.3 years ago AZ ▴ 30
0
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2
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2.1k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.7 years ago Clara ▴ 10
3
votes
2
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1.4k
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData ArrayExpress
updated 3.9 years ago by 52k • written 3.9 years ago by • 0
1
vote
3
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1.2k
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DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 4.1 years ago by 43k • written 4.1 years ago by • 0
0
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0
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1.5k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
4.2 years ago jol.espinoz ▴ 40
0
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1
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909
views
Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 50
0
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0
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966
views
nested design with random factor and limma???
ExpressionData limma ExpressionData limma
16.6 years ago Gordon Smyth 52k
1
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0
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961
views
nested design with random factor and limma???
ExpressionData limma ExpressionData limma
16.7 years ago Bettina Kulle Andreassen ▴ 20
0
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0
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1.2k
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How to display or output expression data with non-unique feature labels?
ExpressionData ExpressionData
17.7 years ago Kocherginsky, Masha [BSD] - HSD ▴ 10
0
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0
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1.4k
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How to display or output expression data with non-unique feature labels?
Annotation ExpressionData Annotation ExpressionData
17.7 years ago Martin Morgan 25k
20 results • Page 1 of 1
Recent ...
Replies
Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages? by wilkinson • 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0
I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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