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ExpressionData
•
reset
3
votes
2
replies
1.1k
views
Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools
limma
ExpressionData
RNASeq
edgeR
16 months ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
669
views
Time change in expression vs time change in phenotype
Transcriptomics
ExpressionData
DESeq2
updated 2.4 years ago by
Michael Love
43k • written 2.4 years ago by
Ivan
• 0
0
votes
2
replies
1.0k
views
Doubt about expression data as well as assay
GEOquery
ExpressionData
assay
SummarizedExperiment
ExpressionAtlas
updated 2.5 years ago by
pmadrigal
• 0 • written 2.5 years ago by
Kritikaverma2707
• 0
3
votes
2
replies
932
views
please resolve the issue
gene
ExpressionData
updated 2.5 years ago by
James W. MacDonald
68k • written 2.5 years ago by
sonal
• 0
1
vote
2
replies
4.6k
views
R: Confused about Limma R package output being LogFC or Log2FC
limma
R
ExpressionData
updated 2.6 years ago by
Gordon Smyth
53k • written 2.7 years ago by
Keith
• 0
0
votes
3
replies
1.2k
views
expression data
ExpressionData
ExpressionNormalizationWorkflow
updated 3.0 years ago by
James W. MacDonald
68k • written 3.0 years ago by
Upasana
• 0
0
votes
0
replies
805
views
edgeR testing interactions between two factors while controlling for blocking factor
edgeR
ExpressionData
RNASeqData
3.5 years ago
Mafalda
• 0
0
votes
1
reply
1.1k
views
HSMMSingleCell metadata
ExperimentHubData
ExpressionData
CellDataSet
RNASeqData
3.5 years ago
karl.stamm
▴ 10
2
votes
2
replies
1.2k
views
Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression
DESeq2
ExpressionData
updated 3.5 years ago by
fivescarynightsgames
• 0 • written 3.5 years ago by
reza
▴ 10
0
votes
3
replies
1.3k
views
Error in loading data set
ExpressionData
updated 3.6 years ago by
Basti
▴ 780 • written 3.7 years ago by
Muhammad
• 0
0
votes
0
replies
784
views
Gene expression changes in one condition
RNASeq
Gene
ExpressionData
3.9 years ago
AZ
▴ 30
0
votes
2
replies
2.3k
views
PCA and heatmaps: most variable genes selection
DESeq2
ExpressionData
heatmaps
pca
4.3 years ago
Clara
▴ 10
3
votes
2
replies
1.6k
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData
ArrayExpress
updated 4.4 years ago by
Gordon Smyth
53k • written 4.4 years ago by
Gero
• 0
1
vote
3
replies
1.3k
views
DESeq analysis with Biological replicate.
DESeq2
ExpressionData
GeneExpression
updated 4.6 years ago by
Michael Love
43k • written 4.6 years ago by
Javad_Sadeghi
• 0
0
votes
0
replies
1.7k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network
StatisticalMethod
WGCNA
ExpressionData
4.7 years ago
jol.espinoz
▴ 40
0
votes
1
reply
1.0k
views
Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 4.8 years ago by
Michael Love
43k • written 4.8 years ago by
Bine
▴ 50
0
votes
0
replies
1.0k
views
nested design with random factor and limma???
ExpressionData
limma
ExpressionData
limma
17.2 years ago
Gordon Smyth
53k
1
vote
0
replies
1.0k
views
nested design with random factor and limma???
ExpressionData
limma
ExpressionData
limma
17.2 years ago
Bettina Kulle Andreassen
▴ 20
0
votes
0
replies
1.3k
views
How to display or output expression data with non-unique feature labels?
ExpressionData
ExpressionData
18.2 years ago
Kocherginsky, Masha [BSD] - HSD
▴ 10
0
votes
0
replies
1.5k
views
How to display or output expression data with non-unique feature labels?
Annotation
ExpressionData
Annotation
ExpressionData
18.2 years ago
Martin Morgan
25k
20 results • Page
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Comment: Visualization of Functional Enrichment Result with enrichplot: How to control la
by
zhaoqiansun0592
• 0
Wow, this is super helpful! I always struggle with label sizes in enrichplot. Glad to see a solution using gginnards([Pasjans][1]) and ggre…
Comment: Could we detect difference at pathway level but not significant different at gen
by
zhaoqiansun0592
• 0
Interesting question! It's cool that ChatGPT4 gave such a helpful answer. I've also been wondering if pathways([space waves][1]) can show d…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
zhaoqiansun0592
• 0
Good to know there are workarounds for these tricky [doodle baseball][1]! Thanks for sharing the tips! [1]: https://doodle-baseball.cc/
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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