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ExpressionData
•
reset
3
votes
2
replies
1.2k
views
Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools
limma
ExpressionData
RNASeq
edgeR
19 months ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
751
views
Time change in expression vs time change in phenotype
Transcriptomics
ExpressionData
DESeq2
updated 2.7 years ago by
Michael Love
43k • written 2.7 years ago by
Ivan
• 0
0
votes
2
replies
1.1k
views
Doubt about expression data as well as assay
GEOquery
ExpressionData
assay
SummarizedExperiment
ExpressionAtlas
updated 2.7 years ago by
pmadrigal
• 0 • written 2.7 years ago by
Kritikaverma2707
• 0
3
votes
2
replies
1.0k
views
please resolve the issue
gene
ExpressionData
updated 2.8 years ago by
James W. MacDonald
68k • written 2.8 years ago by
sonal
• 0
1
vote
2
replies
4.8k
views
R: Confused about Limma R package output being LogFC or Log2FC
limma
R
ExpressionData
updated 2.9 years ago by
Gordon Smyth
53k • written 2.9 years ago by
Keith
• 0
0
votes
3
replies
1.3k
views
expression data
ExpressionData
ExpressionNormalizationWorkflow
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
Upasana
• 0
0
votes
0
replies
867
views
edgeR testing interactions between two factors while controlling for blocking factor
edgeR
ExpressionData
RNASeqData
3.7 years ago
Mafalda
• 0
0
votes
1
reply
1.2k
views
HSMMSingleCell metadata
ExperimentHubData
ExpressionData
CellDataSet
RNASeqData
3.8 years ago
karl.stamm
▴ 10
2
votes
2
replies
1.3k
views
Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression
DESeq2
ExpressionData
updated 3.7 years ago by
fivescarynightsgames
• 0 • written 3.8 years ago by
reza
▴ 10
0
votes
3
replies
1.3k
views
Error in loading data set
ExpressionData
updated 3.9 years ago by
Basti
▴ 780 • written 3.9 years ago by
Muhammad
• 0
0
votes
0
replies
836
views
Gene expression changes in one condition
RNASeq
Gene
ExpressionData
4.1 years ago
AZ
▴ 30
0
votes
2
replies
2.4k
views
PCA and heatmaps: most variable genes selection
DESeq2
ExpressionData
heatmaps
pca
4.5 years ago
Clara
▴ 10
3
votes
2
replies
1.7k
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData
ArrayExpress
updated 4.7 years ago by
Gordon Smyth
53k • written 4.7 years ago by
Gero
• 0
1
vote
3
replies
1.4k
views
DESeq analysis with Biological replicate.
DESeq2
ExpressionData
GeneExpression
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
Javad_Sadeghi
• 0
0
votes
0
replies
1.8k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network
StatisticalMethod
WGCNA
ExpressionData
4.9 years ago
jol.espinoz
▴ 40
0
votes
1
reply
1.1k
views
Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
Bine
▴ 50
0
votes
0
replies
1.1k
views
nested design with random factor and limma???
ExpressionData
limma
ExpressionData
limma
17.4 years ago
Gordon Smyth
53k
1
vote
0
replies
1.1k
views
nested design with random factor and limma???
ExpressionData
limma
ExpressionData
limma
17.4 years ago
Bettina Kulle Andreassen
▴ 20
0
votes
0
replies
1.4k
views
How to display or output expression data with non-unique feature labels?
ExpressionData
ExpressionData
18.5 years ago
Kocherginsky, Masha [BSD] - HSD
▴ 10
0
votes
0
replies
1.5k
views
How to display or output expression data with non-unique feature labels?
Annotation
ExpressionData
Annotation
ExpressionData
18.5 years ago
Martin Morgan
25k
20 results • Page
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Comment: EuroBioC2026 abstract submission is open!
by
TikTsokaasocissalpc
• 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data
by
TikTsokaasocissalpc
• 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
gexose2839
• 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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