Showing : FoldChange • reset
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
23 months ago Sabiha ▴ 20
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Question regarding lfcShrink types in DiffBind
FoldChange DiffBind lfcShrink
updated 2.3 years ago by ★ 5.2k • written 2.3 years ago by ▴ 20
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4
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DESeq2 lfcShrink function used in DiffBind package
FoldChange DiffBind lfcShrink Cut&TagData
2.4 years ago bhandary.8590 ▴ 20
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DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2 TPM Foldchange
updated 3.6 years ago by 43k • written 3.6 years ago by • 0
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1.4k
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First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 3.8 years ago by 53k • written 3.8 years ago by • 0
0
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2
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1.7k
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sigh of log2FC values in DESeq2
sign FoldChange DESeq2 reference
updated 3.9 years ago by 43k • written 3.9 years ago by • 0
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5
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How does edgeR calculate fold change?
DifferentialExpression DEA FC FoldChange edgeR
4.2 years ago zhxiaokang ▴ 20
2
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9
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3.4k
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extract fold change of a list of gene from EdgeR?
EdgeR RNAseq Foldchange
updated 4.4 years ago by ★ 1.4k • written 4.4 years ago by • 0
0
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7
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4.6k
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 5.0 years ago by 53k • written 5.0 years ago by ▴ 20
4
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5
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All genes display positive fold change in topTable results after limma
limma microarray foldchange DEG GEO
updated 5.8 years ago by 53k • written 5.8 years ago by ▴ 40
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1
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1.8k
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rnaseqDTU log2fold change DEXSeq
DEXSeq DTU salmon rnaseqDTU foldchange
updated 6.5 years ago by 43k • written 6.8 years ago by ▴ 60
5
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4
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Foldchange values Limma
limma RNAseq foldchange
6.7 years ago susana.amaral.teixeira ▴ 20
12 results • Page 1 of 1
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
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Popular Question to edward.esiribloom • 0
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