Bioconductor FoldChange

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StatisticalMethod FoldChange edgeR RNASeq

2.1 years ago Sabiha ▴ 20

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5.2k

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FoldChange DiffBind lfcShrink

updated 2.5 years ago by Rory Stark ★ 5.2k • written 2.5 years ago by bhandary.8590 ▴ 20

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1.8k

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FoldChange DiffBind lfcShrink Cut&TagData

2.6 years ago bhandary.8590 ▴ 20

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2.4k

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DESeq2 TPM Foldchange

updated 3.8 years ago by Michael Love 43k • written 3.8 years ago by dadca596 • 0

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1.4k

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edgeR RNA-Seq log2 foldchange q_value

updated 4.0 years ago by Gordon Smyth 53k • written 4.0 years ago by johndavidgriner74 • 0

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1.8k

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sign FoldChange DESeq2 reference

updated 4.1 years ago by Michael Love 43k • written 4.1 years ago by yampolsk • 0

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7.9k

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DifferentialExpression DEA FC FoldChange edgeR

4.4 years ago zhxiaokang ▴ 20

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3.5k

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EdgeR RNAseq Foldchange

updated 4.5 years ago by swbarnes2 ★ 1.4k • written 4.6 years ago by najib • 0

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4.9k

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foldchange topGO DifferentialExpression enrichment

updated 5.2 years ago by Gordon Smyth 53k • written 5.2 years ago by lessismore ▴ 20

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2.2k

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limma microarray foldchange DEG GEO

updated 5.9 years ago by Gordon Smyth 53k • written 6.0 years ago by Pietro ▴ 40

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1.9k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.7 years ago by Michael Love 43k • written 7.0 years ago by fiona.dick91 ▴ 60

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1.9k

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limma RNAseq foldchange

6.9 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You just need the mouse identifier (controls baseline) and the group specific allelic effect.

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Julia Broadbent • 0

Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You may want to speak with a local statistician, because you don't just want to find the first full rank matrix and run with that if it doe…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

It is fine for your mass spec facility to include blank samples as part of their internal QC, but such samples should not in my opinion be …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Hm, okay, in building a fake model by hand I think I'm realizing the problem: `mouse` and its variants are ideally acting as basically a ra…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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