Bioconductor FoldChange

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1.3k

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StatisticalMethod FoldChange edgeR RNASeq

2.0 years ago Sabiha ▴ 20

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5.2k

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FoldChange DiffBind lfcShrink

updated 2.4 years ago by Rory Stark ★ 5.2k • written 2.4 years ago by bhandary.8590 ▴ 20

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1.7k

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FoldChange DiffBind lfcShrink Cut&TagData

2.5 years ago bhandary.8590 ▴ 20

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2.4k

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DESeq2 TPM Foldchange

updated 3.7 years ago by Michael Love 43k • written 3.7 years ago by dadca596 • 0

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1.4k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.9 years ago by Gordon Smyth 53k • written 3.9 years ago by johndavidgriner74 • 0

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1.7k

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sign FoldChange DESeq2 reference

updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by yampolsk • 0

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DifferentialExpression DEA FC FoldChange edgeR

4.3 years ago zhxiaokang ▴ 20

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3.4k

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EdgeR RNAseq Foldchange

updated 4.5 years ago by swbarnes2 ★ 1.4k • written 4.5 years ago by najib • 0

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foldchange topGO DifferentialExpression enrichment

updated 5.1 years ago by Gordon Smyth 53k • written 5.1 years ago by lessismore ▴ 20

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2.1k

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limma microarray foldchange DEG GEO

updated 5.9 years ago by Gordon Smyth 53k • written 5.9 years ago by Pietro ▴ 40

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.7 years ago by Michael Love 43k • written 6.9 years ago by fiona.dick91 ▴ 60

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1.9k

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limma RNAseq foldchange

6.8 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Comment: segfault in edgeR glmQLFit by Mark • 0

Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k

> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…

Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0

Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…

Comment: DESeq2 on non-RNASeq counts data by TikTsokaasocissalpc • 0

In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…

Comment: blockwiseModule crashes in the end and doesn't generate modules by gexose2839 • 0

Sounds good. @[time][1] [1]: https://timeduration.github.io

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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