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GOexpress
•
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0
votes
2
replies
3.2k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
3.0 years ago
Chruut
• 0
2
votes
8
replies
1.9k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 3.1 years ago by
kevin.rue
▴ 350 • written 3.1 years ago by
grolo
• 0
0
votes
0
replies
709
views
GOexpress pvalue and gene sets
GOexpress
3.8 years ago
jms2520
▴ 10
0
votes
4
replies
1.6k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 5.8 years ago by
kevin.rue
▴ 350 • written 5.8 years ago by
atorson
• 0
1
vote
2
replies
1.9k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 6.1 years ago by
kevin.rue
▴ 350 • written 6.1 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.5k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
6.2 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.8k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
7.8 years ago
sina.zboron
• 0
9
votes
8
replies
5.4k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
8.7 years ago
Bogdan
▴ 670
5
votes
4
replies
2.1k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 8.8 years ago by
kevin.rue
▴ 350 • written 8.8 years ago by
mforde84
▴ 20
0
votes
3
replies
4.6k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 9.5 years ago by
kevin.rue
▴ 350 • written 9.5 years ago by
Darya Vanichkina
▴ 130
2
votes
6
replies
3.2k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 9.7 years ago by
kevin.rue
▴ 350 • written 9.7 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.8k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 10.1 years ago by
kevin.rue
▴ 350 • written 10.1 years ago by
willj
▴ 30
3
votes
6
replies
2.3k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 10.1 years ago by
kevin.rue
▴ 350 • written 10.1 years ago by
kcamnairb
▴ 10
6
votes
7
replies
4.7k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
10.1 years ago
martin.hoelzer
▴ 20
14 results • Page
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList
by
Kevin Blighe
★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data
by
Kevin Blighe
★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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