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GOexpress
•
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0
votes
2
replies
3.2k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
2.9 years ago
Chruut
• 0
2
votes
8
replies
1.9k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 3.0 years ago by
kevin.rue
▴ 350 • written 3.0 years ago by
grolo
• 0
0
votes
0
replies
692
views
GOexpress pvalue and gene sets
GOexpress
3.7 years ago
jms2520
▴ 10
0
votes
4
replies
1.6k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 5.7 years ago by
kevin.rue
▴ 350 • written 5.7 years ago by
atorson
• 0
1
vote
2
replies
1.8k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 6.0 years ago by
kevin.rue
▴ 350 • written 6.0 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.5k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
6.1 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.8k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
7.7 years ago
sina.zboron
• 0
9
votes
8
replies
5.3k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
8.6 years ago
Bogdan
▴ 670
5
votes
4
replies
2.1k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 8.7 years ago by
kevin.rue
▴ 350 • written 8.7 years ago by
mforde84
▴ 20
0
votes
3
replies
4.6k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 9.4 years ago by
kevin.rue
▴ 350 • written 9.4 years ago by
Darya Vanichkina
▴ 130
2
votes
6
replies
3.2k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 9.6 years ago by
kevin.rue
▴ 350 • written 9.6 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.8k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 10.0 years ago by
kevin.rue
▴ 350 • written 10.0 years ago by
willj
▴ 30
3
votes
6
replies
2.3k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 10.0 years ago by
kevin.rue
▴ 350 • written 10.0 years ago by
kcamnairb
▴ 10
6
votes
7
replies
4.6k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
10.0 years ago
martin.hoelzer
▴ 20
14 results • Page
1 of 1
Recent ...
Replies
Comment: Results with PON give more variants
by
ejafgdf4.ge.r.m
• 0
It s common to expect Mutect2 with a PON to be a strict subset of Mutect2 without it but seeing unique variants in Mutect2withPON isn t unu…
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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