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GRange
•
reset
0
votes
1
reply
699
views
Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
4.8 years ago
mawusse.agbessi
• 0
2
votes
0
replies
941
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
5.1 years ago
rmash
▴ 20
0
votes
1
reply
722
views
Multi-sample Heatmap from GRange
GRange
updated 6.0 years ago by
James W. MacDonald
67k • written 6.0 years ago by
Danny
• 0
0
votes
3
replies
2.9k
views
Selecting columns form a list of grange objects
r
granges
grange
6.2 years ago
g.k
• 0
1
vote
3
replies
1.2k
views
GRange and bam files
bioconductor
Grange
6.6 years ago
Merlin
▴ 10
0
votes
1
reply
1.1k
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
6.7 years ago
g.k
• 0
1
vote
2
replies
1.8k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
g.k
• 0
3
votes
4
replies
5.8k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
endrebak85
▴ 40
1
vote
2
replies
2.6k
views
Extract GRanges for gene data frame
GRange
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
mdeea123
▴ 10
9
votes
21
replies
12k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 9.0 years ago by
Ou, Jianhong
★ 1.3k • written 9.0 years ago by
tangming2005
▴ 200
0
votes
1
reply
1.2k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 9.9 years ago by
Valerie Obenchain
★ 6.8k • written 9.9 years ago by
cidster12
• 0
4
votes
2
replies
1.4k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
10.1 years ago • updated 10.0 years ago
Bogdan
▴ 670
12 results • Page
1 of 1
Recent ...
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Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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