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software error Grange RangedData

5.7 years ago mawusse.agbessi • 0

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GenomicRanges GenomicFeatures grange distanceToNearest R

6.1 years ago rmash ▴ 20

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GRange

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by Danny • 0

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r granges grange

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bioconductor Grange

7.6 years ago Merlin ▴ 10

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R genomicranges granges grange

7.6 years ago g.k • 0

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r grange granges iranges

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GRange genomicranges

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GRange

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GRange genomicranges genomicfeatures

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GenomicFeatures GRange Rsamtools

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Grange

11.0 years ago Bogdan ▴ 670

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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