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GRange
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0
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Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
4.2 years ago
mawusse.agbessi
• 0
2
votes
0
replies
805
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
4.5 years ago
rmash
▴ 20
0
votes
1
reply
608
views
Multi-sample Heatmap from GRange
GRange
updated 5.4 years ago by
James W. MacDonald
66k • written 5.4 years ago by
Danny
• 0
0
votes
3
replies
2.5k
views
Selecting columns form a list of grange objects
r
granges
grange
5.7 years ago • updated 5.6 years ago
g.k
• 0
1
vote
3
replies
969
views
GRange and bam files
bioconductor
Grange
6.0 years ago
Merlin
▴ 10
0
votes
1
reply
934
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
6.1 years ago
g.k
• 0
1
vote
2
replies
1.4k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 6.2 years ago by
Michael Lawrence
★ 11k • written 6.2 years ago by
g.k
• 0
3
votes
4
replies
5.3k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
endrebak85
▴ 40
1
vote
2
replies
2.4k
views
Extract GRanges for gene data frame
GRange
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
mdeea123
▴ 10
9
votes
21
replies
11k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 8.4 years ago by
Ou, Jianhong
★ 1.3k • written 8.4 years ago by
tangming2005
▴ 190
0
votes
1
reply
1.0k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 9.3 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
cidster12
• 0
4
votes
2
replies
1.3k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
9.5 years ago • updated 9.4 years ago
Bogdan
▴ 670
12 results • Page
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Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
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66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
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shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq?
by
baptiste.bidon
• 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
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how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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