Showing : GenVisR • reset
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GenVisR - adding on genomic positions to CovGen graph
GenVisR GenCov
3.0 years ago Amy_ • 0
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error in package GenVisR while installing
GenVisR GenVis
updated 23 months ago by ▴ 30 • written 3.2 years ago by • 0
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Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 3.4 years ago by 16k • written 3.4 years ago by • 0
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How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR maftools
3.4 years ago e • 0
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Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants waterfall GenVisR
updated 4.9 years ago by ▴ 30 • written 4.9 years ago by ▴ 10
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Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
6.0 years ago sheneicechang • 0
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
6.1 years ago • updated 6.0 years ago sheneicechang • 0
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how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr genvisr waterfall mutation
updated 6.9 years ago by ▴ 30 • written 6.9 years ago by • 0
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1.2k
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Issues with lohSpec
genvisr lohSpec
7.3 years ago dharia.priyadarshani • 0
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Copy Number plot cnSpec - how to order samples
genvisr
7.4 years ago cedric.vmdl • 0
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GenVisR- cnSpec CNV plot
GenVisR
7.7 years ago daijieqiong ▴ 10
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1.6k
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an error in TvTi: package GenVisR
GenVisR
updated 8.7 years ago by ▴ 30 • written 8.7 years ago by ▴ 670
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GenVisR Installation error message
genvisR
9.6 years ago Deep Adhya ▴ 20
13 results • Page 1 of 1
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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