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GenVisR
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
3.0 years ago
Amy_
• 0
3
votes
10
replies
4.1k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 23 months ago by
zlskidmore
▴ 30 • written 3.2 years ago by
abhisikta
• 0
0
votes
1
reply
1.6k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 3.3 years ago by
Hervé Pagès
16k • written 3.4 years ago by
Michel
• 0
0
votes
0
replies
2.7k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
3.4 years ago
e
• 0
0
votes
1
reply
1.5k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 4.9 years ago by
zlskidmore
▴ 30 • written 4.9 years ago by
Jeni
▴ 10
0
votes
1
reply
1.1k
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
6.0 years ago
sheneicechang
• 0
0
votes
0
replies
1.2k
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
6.1 years ago • updated 6.0 years ago
sheneicechang
• 0
0
votes
1
reply
1.5k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 6.8 years ago by
zlskidmore
▴ 30 • written 6.9 years ago by
ZihaoXing
• 0
0
votes
1
reply
1.2k
views
Issues with lohSpec
genvisr
lohSpec
7.2 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.7k
views
Copy Number plot cnSpec - how to order samples
genvisr
7.4 years ago
cedric.vmdl
• 0
0
votes
4
replies
2.7k
views
GenVisR- cnSpec CNV plot
GenVisR
7.7 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.6k
views
an error in TvTi: package GenVisR
GenVisR
updated 8.7 years ago by
zlskidmore
▴ 30 • written 8.7 years ago by
Bogdan
▴ 670
2
votes
5
replies
3.3k
views
GenVisR Installation error message
genvisR
9.6 years ago
Deep Adhya
▴ 20
13 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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