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GenVisR
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
3.1 years ago
Amy_
• 0
3
votes
10
replies
4.1k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 24 months ago by
zlskidmore
▴ 30 • written 3.3 years ago by
abhisikta
• 0
0
votes
1
reply
1.7k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 3.4 years ago by
Hervé Pagès
16k • written 3.4 years ago by
Michel
• 0
0
votes
0
replies
2.8k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
3.4 years ago
e
• 0
0
votes
1
reply
1.6k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 5.0 years ago by
zlskidmore
▴ 30 • written 5.0 years ago by
Jeni
▴ 10
0
votes
1
reply
1.1k
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
6.0 years ago
sheneicechang
• 0
0
votes
0
replies
1.2k
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
6.1 years ago
sheneicechang
• 0
0
votes
1
reply
1.5k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 6.9 years ago by
zlskidmore
▴ 30 • written 7.0 years ago by
ZihaoXing
• 0
0
votes
1
reply
1.2k
views
Issues with lohSpec
genvisr
lohSpec
7.3 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.7k
views
Copy Number plot cnSpec - how to order samples
genvisr
7.4 years ago
cedric.vmdl
• 0
0
votes
4
replies
2.8k
views
GenVisR- cnSpec CNV plot
GenVisR
7.8 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.6k
views
an error in TvTi: package GenVisR
GenVisR
updated 8.7 years ago by
zlskidmore
▴ 30 • written 8.7 years ago by
Bogdan
▴ 670
2
votes
5
replies
3.4k
views
GenVisR Installation error message
genvisR
9.7 years ago
Deep Adhya
▴ 20
13 results • Page
1 of 1
Recent ...
Replies
Answer: Integration: Paired-end vs healthy single-end from a different source
by
James W. MacDonald
68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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