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GenVisR
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
3.3 years ago
Amy_
• 0
3
votes
10
replies
4.3k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 2.2 years ago by
zlskidmore
▴ 30 • written 3.5 years ago by
abhisikta
• 0
0
votes
1
reply
1.8k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 3.6 years ago by
Hervé Pagès
16k • written 3.6 years ago by
Michel
• 0
0
votes
0
replies
2.8k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
3.6 years ago
e
• 0
0
votes
1
reply
1.7k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 5.2 years ago by
zlskidmore
▴ 30 • written 5.2 years ago by
Jeni
▴ 10
0
votes
1
reply
1.1k
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
6.2 years ago
sheneicechang
• 0
0
votes
0
replies
1.3k
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
6.3 years ago
sheneicechang
• 0
0
votes
1
reply
1.6k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 7.1 years ago by
zlskidmore
▴ 30 • written 7.2 years ago by
ZihaoXing
• 0
0
votes
1
reply
1.2k
views
Issues with lohSpec
genvisr
lohSpec
7.5 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.8k
views
Copy Number plot cnSpec - how to order samples
genvisr
7.6 years ago
cedric.vmdl
• 0
0
votes
4
replies
2.9k
views
GenVisR- cnSpec CNV plot
GenVisR
8.0 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.7k
views
an error in TvTi: package GenVisR
GenVisR
updated 8.9 years ago by
zlskidmore
▴ 30 • written 8.9 years ago by
Bogdan
▴ 670
2
votes
5
replies
3.4k
views
GenVisR Installation error message
genvisR
9.9 years ago
Deep Adhya
▴ 20
13 results • Page
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Comment: Incosistencies in buildSNNGraph() function
by
ATpoint
★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
by
Aaron Lun
★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Votes
Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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