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GenVisR
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
2.9 years ago
Amy_
• 0
3
votes
10
replies
4.0k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 22 months ago by
zlskidmore
▴ 30 • written 3.2 years ago by
abhisikta
• 0
0
votes
1
reply
1.6k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 3.3 years ago by
Hervé Pagès
16k • written 3.3 years ago by
Michel
• 0
0
votes
0
replies
2.7k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
3.3 years ago
e
• 0
0
votes
1
reply
1.5k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 4.8 years ago by
zlskidmore
▴ 30 • written 4.8 years ago by
Jeni
▴ 10
0
votes
1
reply
1.0k
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
5.9 years ago
sheneicechang
• 0
0
votes
0
replies
1.2k
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
6.0 years ago
sheneicechang
• 0
0
votes
1
reply
1.5k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 6.8 years ago by
zlskidmore
▴ 30 • written 6.8 years ago by
ZihaoXing
• 0
0
votes
1
reply
1.2k
views
Issues with lohSpec
genvisr
lohSpec
7.2 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.7k
views
Copy Number plot cnSpec - how to order samples
genvisr
7.3 years ago
cedric.vmdl
• 0
0
votes
4
replies
2.7k
views
GenVisR- cnSpec CNV plot
GenVisR
7.6 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.6k
views
an error in TvTi: package GenVisR
GenVisR
updated 8.6 years ago by
zlskidmore
▴ 30 • written 8.6 years ago by
Bogdan
▴ 670
2
votes
5
replies
3.3k
views
GenVisR Installation error message
genvisR
9.6 years ago • updated 9.5 years ago
Deep Adhya
▴ 20
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Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
by
James W. MacDonald
68k
There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…
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by
Michael Love
43k
I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…
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by
boczniak767
▴ 740
@atpoint Should I first standardise data and then average replicates?
Comment: 3-factor DESeq2 trime-series analysis
by
gogeni5529
• 0
Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…
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