Showing : GeneOntology • reset
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clusterProfiler, AnnotationHub, and discrepancies in GO Terms
Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology
updated 3 months ago by 42k • written 3 months ago by • 0
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1.7k
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Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 19 months ago by 66k • written 19 months ago by • 0
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4
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880
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
19 months ago faiza • 0
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Gene Ontology on Streptococcus Pneumoniae genes sets
GO GeneOntology LocusIDtogeneIDconversion
20 months ago BioinFo.X • 0
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Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 23 months ago by 66k • written 24 months ago by ▴ 60
1
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937
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Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
3.3 years ago MOHAMMAD • 0
2
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Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 3.3 years ago by ▴ 780 • written 3.3 years ago by • 0
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topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 3.4 years ago by ▴ 730 • written 3.4 years ago by • 0
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question on GO analysis using clusterProfiler
clusterprofiler geneontology
updated 6.6 years ago by ▴ 160 • written 6.6 years ago by • 0
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1.0k
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GOSemSim bioconductor package
geneontology R go semantic similarity
updated 7.5 years ago by ★ 6.8k • written 7.5 years ago by • 0
10 results • Page 1 of 1
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Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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