Bioconductor GeneOntology

Showing : GeneOntology • reset

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7.1k

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clusterprofiler geneontology

updated 6.5 years ago by thokall ▴ 160 • written 6.5 years ago by giuseppe0525 • 0

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1.4k

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topGO enrichmentanalysis geneontology

updated 3.2 years ago by Lluís Revilla Sancho ▴ 730 • written 3.3 years ago by Aini • 0

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925

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GO.db Annotation Clusterprofile GeneOntology

updated 3.2 years ago by Basti ▴ 780 • written 3.2 years ago by MOHAMMAD • 0

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903

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GOstats Go.db GeneOntology

3.1 years ago MOHAMMAD • 0

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812

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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1.6k

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rnaseq rnaseqGene geneontology

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by acram • 0

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1.6k

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Annotation GeneOntology topGO GO

updated 22 months ago by James W. MacDonald 65k • written 22 months ago by Raito92 ▴ 60

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340

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 9 weeks ago by Michael Love 41k • written 9 weeks ago by Filipe • 0

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982

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geneontology R go semantic similarity

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by manasa22.reddy • 0

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528

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GO GeneOntology LocusIDtogeneIDconversion

19 months ago BioinFo.X • 0

10 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by gene_bioconductor ▴ 10

Thanks for your thoughtful and detailed comment, Gordon

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …

Answer: How to save the DEXSeq results by Michael Love 41k

If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…

Answer: Method to find pathways different between 2 groups by Robert Castelo ★ 3.3k

Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …

Answer: Couldn't connect to server while using "pathways" by James W. MacDonald 65k

As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…

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Answer: Method to find pathways different between 2 groups

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: Method to find pathways different between 2 groups

Comment: Trying to use enrichGO

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