Bioconductor GeneOntology

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333

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 8 weeks ago by Michael Love 41k • written 9 weeks ago by Filipe • 0

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1.6k

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rnaseq rnaseqGene geneontology

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by acram • 0

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805

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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522

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GO GeneOntology LocusIDtogeneIDconversion

19 months ago BioinFo.X • 0

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1.6k

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Annotation GeneOntology topGO GO

updated 22 months ago by James W. MacDonald 65k • written 22 months ago by Raito92 ▴ 60

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897

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GOstats Go.db GeneOntology

3.1 years ago MOHAMMAD • 0

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922

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GO.db Annotation Clusterprofile GeneOntology

updated 3.2 years ago by Basti ▴ 780 • written 3.2 years ago by MOHAMMAD • 0

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1.4k

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topGO enrichmentanalysis geneontology

updated 3.2 years ago by Lluís Revilla Sancho ▴ 730 • written 3.2 years ago by Aini • 0

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7.1k

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clusterprofiler geneontology

updated 6.5 years ago by thokall ▴ 160 • written 6.5 years ago by giuseppe0525 • 0

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980

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geneontology R go semantic similarity

updated 7.3 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by manasa22.reddy • 0

10 results • Page 1 of 1

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Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Votes

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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Popular Question to rohitsatyam102 ▴ 20