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Grange
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Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
5.7 years ago
mawusse.agbessi
• 0
2
votes
0
replies
1.1k
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
6.0 years ago
rmash
▴ 20
0
votes
1
reply
901
views
Multi-sample Heatmap from GRange
GRange
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
Danny
• 0
0
votes
3
replies
3.4k
views
Selecting columns form a list of grange objects
r
granges
grange
7.2 years ago
g.k
• 0
1
vote
3
replies
1.4k
views
GRange and bam files
bioconductor
Grange
7.5 years ago
Merlin
▴ 10
0
votes
1
reply
1.3k
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
7.6 years ago
g.k
• 0
1
vote
2
replies
2.3k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
g.k
• 0
3
votes
4
replies
6.3k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
endrebak85
▴ 40
1
vote
2
replies
2.9k
views
Extract GRanges for gene data frame
GRange
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
mdeea123
▴ 10
9
votes
21
replies
13k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 9.9 years ago by
Ou, Jianhong
★ 1.3k • written 9.9 years ago by
tangming2005
▴ 200
0
votes
1
reply
1.3k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 10.8 years ago by
Valerie Obenchain
★ 6.8k • written 10.8 years ago by
cidster12
• 0
4
votes
2
replies
1.5k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
11.0 years ago
Bogdan
▴ 670
12 results • Page
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Answer: How can I correctly use phyloseq with Docker?
by
Kevin Blighe
★ 4.0k
The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …
Answer: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
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Kevin Blighe
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Your proposed code is correct and will achieve the desired outcome. The boolean filter expression `IFNg & TNFa | IFNg & IL2 | TNFa & IL2` i…
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The discrepancy between `final_exp1` and `final_exp2` could arise from several factors, despite matching dimensions. The `identical()` func…
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Hello Luna. The findUORFs function in ORFik identifies upstream open reading frames by extracting and concatenating the sequences of exo…
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Your observation aligns with the expected behavior of Mutect2 in tumor-only mode, where the panel of normals (PON) integrates into the vari…
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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