Bioconductor HELP

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R deseq2 differential gene expression help

7.0 years ago • updated 6.9 years ago fischer87 • 0

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edger differential gene expression without replicate nested design help

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by knipehf • 0

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clusterprofiler input files error help

updated 6.2 years ago by Guangchuang Yu ★ 1.2k • written 6.2 years ago by Mataivic • 0

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759

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limma time series help

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.4 years ago by rm1238 • 0

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HELP ChIC.data PeakDetection ChipOnChipData

7 months ago michela ▴ 20

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HELP Data

updated 9 months ago by Guido Hooiveld ★ 3.6k • written 9 months ago by mcclurejenniferc • 0

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limma help

updated 7.5 years ago by svlachavas ▴ 810 • written 7.5 years ago by libya.tahani • 0

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RNASeqData RNASeq GEO RNASeqR HELP

2.2 years ago hgalmoore • 0

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STRINGdb HELP

updated 3 months ago by Rodrigo ▴ 10 • written 15 months ago by Jessica ▴ 10

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HELP HelloRanges

updated 7 months ago by James W. MacDonald 63k • written 7 months ago by michela ▴ 20

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HELP ChIPpeakAnno

18 months ago lexi.kellington • 0

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DESeq2 HELP

3 months ago Michael • 0

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DESeq2 volcanoplot deseq HELP contrast

updated 3 months ago by Basti ▴ 720 • written 3 months ago by Michael • 0

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help DESeq2 DESeqDataSetFromMatrix rownames

updated 12 months ago by Sanatan • 0 • written 2.1 years ago by dorina.jamniczky • 0

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help software error

updated 4.4 years ago by Martin Morgan 25k • written 4.4 years ago by mafusa20 • 0

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ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene

7 months ago michela ▴ 20

16 results • Page 1 of 1

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Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

Perhaps you are thinking of data analyses where the dependent variable is something other than expression itself. In the context of gene e…

Comment: Interpret plot from DiffBind by Chris • 0

If I want to find genes that are more open in diseased than control, I can filter out peaks that have highest log2Fold change like this, is…

Comment: Interpret plot from DiffBind by Chris • 0

Hi Rory. There are so many red dot above and below the blue line so it is hard to know which condition are more open, is that correct? Is 1…

Comment: Extract Limma Adjusted Values for Plotting by phelankj • 0

Thanks, on the normalized values using the same formula?

Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k

You should use `removeBatchEffect` for that.

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Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

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Scholar to Mike Smith ★ 6.0k