Showing : HTA2.0 • reset
0
votes
2
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1.3k
views
What is the best way to do annotation of the transcript clusters and filter in HTA 2.0
HTA2.0 microarray affy r
4.1 years ago Marco_aurelio • 0
2
votes
7
replies
1.4k
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 4.5 years ago by 67k • written 4.5 years ago by • 0
1
vote
2
replies
1.6k
views
Inconsistent results when normalizing HTA2.0 arrays at "level=core"
oligo HTA2.0 affycoretools RMA fitProbeLevelModel
updated 5.4 years ago by 67k • written 5.4 years ago by ★ 4.1k
4
votes
4
replies
1.3k
views
arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray hta2.0 arrayqualitymetrics
updated 5.9 years ago by ★ 6.6k • written 5.9 years ago by ▴ 10
0
votes
5
replies
2.3k
views
Help for Affymetrix HTA 2.0 [transcript (gene) version] annotation
hta2.0 annotation transcripts
updated 6.2 years ago by ▴ 830 • written 6.2 years ago by • 0
2
votes
8
replies
2.1k
views
Transcript-level SCAN.UPC preprocessing for Affymetrix HTA 2.0 arrays
microarray scan.upc hta2.0
updated 6.9 years ago by ▴ 600 • written 6.9 years ago by • 0
1
vote
3
replies
1.6k
views
Use of RMA to get exon-level summaries for HTA 2.0
differential exon usage exon array analysis annotation hta2.0 diffsplice
updated 7.2 years ago by 67k • written 7.2 years ago by ▴ 20
2
votes
3
replies
1.6k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0 hta2.0 affycoretools
updated 7.2 years ago by 67k • written 7.2 years ago by ▴ 20
2
votes
7
replies
3.1k
views
HTA 2.0 and Transcript level analysis
hta2.0 transcripts
7.2 years ago giroudpaul ▴ 40
0
votes
0
replies
1.2k
views
segfault when trying to convert hta20_Hs_ENSE_22.cdf to binary format
affxparser cdf hta2.0
7.4 years ago relathman ▴ 20
0
votes
0
replies
1.4k
views
Putative batch effect assessment and correction for downstream DE analysis with microarray dataset
hta2.0 limma batch effect affymetrix microarrays ComBat
7.5 years ago svlachavas ▴ 830
2
votes
3
replies
1.7k
views
Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo hta2.0 affymetrix microarrays memory problem
updated 7.6 years ago by 67k • written 7.6 years ago by ▴ 830
6
votes
7
replies
3.6k
views
Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
oligo affycoretools hta2.0 affymetrix
updated 2.5 years ago by ▴ 10 • written 7.6 years ago by ▴ 830
0
votes
0
replies
1.0k
views
(strange?) memory problem when running fitPLM on a set of HTA 2.0 arrays
affyPLM fitPLM hta2.0
8.2 years ago Guido Hooiveld ★ 4.1k
14 results • Page 1 of 1
Recent ...
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Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction by abadgerw • 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k
That is the rows that did converge.
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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