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Comment: minfi latest update for EPIC V2 chip
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Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo.
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To compute CPM values from edgeR:
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y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status)
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But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…
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After applying your suggestion, the following error pops up:
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