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HiTC
•
reset
0
votes
3
replies
1.4k
views
HiTC import is throwing error
HiTC
importC
sparseMatrix
3.6 years ago
shikha
• 0
0
votes
6
replies
1.6k
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
5.9 years ago
sergio.espeso-gil
• 0
1
vote
3
replies
2.2k
views
A/B compartments computation: control settings
HiTC
updated 4.5 years ago by
ahmed.abbaselmahdi
• 0 • written 6.5 years ago by
Konstantin Okonechnikov
▴ 40
1
vote
5
replies
2.4k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
7.5 years ago
ta_awwad
▴ 10
0
votes
2
replies
1.7k
views
Gene Density computation in pca.hic
HiTC
7.6 years ago
cath
▴ 30
0
votes
5
replies
2.2k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 7.9 years ago by
Nicolas Servant
▴ 260 • written 7.9 years ago by
René Wiegandt
• 0
3
votes
5
replies
2.0k
views
normLGF yields non-symetric matrices
HiTC
updated 8.8 years ago by
Nicolas Servant
▴ 260 • written 8.8 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
3.0k
views
FourC object from scratch
hi-c
HiTC
fourcseq
10.3 years ago • updated 10.1 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.6k
views
FourC object from scratch
hic-c
hitc
fourcseq
10.3 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
3.6k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
10.4 years ago • updated 10.3 years ago
Bogdan
▴ 670
0
votes
0
replies
1.2k
views
normalization method for 5C
HiTC
10.4 years ago
Bogdan
▴ 670
0
votes
0
replies
1.4k
views
Problem importing 5C data
importing
HiTC
10.8 years ago
gugpuccio
▴ 10
0
votes
1
reply
3.0k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 12.8 years ago by
Dan Tenenbaum
★ 8.2k • written 12.8 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
1.8k
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 12.9 years ago by
Valerie Obenchain
★ 6.8k • written 12.9 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
1.6k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 13.0 years ago by
Martin Morgan
25k • written 13.0 years ago by
Hermann Norpois
▴ 170
15 results • Page
1 of 1
Recent ...
Replies
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
JKim
• 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results
by
sup0903
• 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Votes
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
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