Showing : Isoform • reset
6
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10
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3.4k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 12 months ago by ★ 5.0k • written 12 months ago by ▴ 10
0
votes
0
replies
752
views
IsoformSwitchAnalyzer
Isoform IsoformSwitchAnalyzeR
2.6 years ago Craig • 0
0
votes
2
replies
1.1k
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio isoform
written 3.0 years ago by • 0
0
votes
5
replies
3.4k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData isoform DESeq2
3.7 years ago • updated 3.6 years ago priyanka.m • 0
0
votes
0
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2.0k
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HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform RNA-seq hisat2 stringtie ballgown
5.2 years ago ra711 • 0
0
votes
5
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2.0k
views
isoform data, deep sequencing and voom
isoform deep sequencing voom
updated 5.4 years ago by 53k • written 5.4 years ago by ▴ 620
0
votes
4
replies
1.7k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport isoform voom
updated 5.4 years ago by 53k • written 5.4 years ago by ▴ 620
1
vote
4
replies
2.0k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 6.2 years ago by ▴ 120 • written 6.2 years ago by • 0
1
vote
4
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1.7k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 6.3 years ago by ★ 1.4k • written 6.3 years ago by • 0
1
vote
5
replies
1.9k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer isoform differential isoform usage
written 7.0 years ago by ▴ 60
0
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0
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1.3k
views
IsoformSwitchAnalyzeR error input
kallisto differential isoform usage isoform
8.1 years ago ilyco • 0
11 results • Page 1 of 1
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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