Bioconductor Isoform

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isoformswitchanalyzer isoform differential isoform usage

written 5.4 years ago by A ▴ 40

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1.1k

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gene isoform quantification rna-seq

updated 4.7 years ago by swbarnes2 ★ 1.3k • written 4.7 years ago by angel.campos • 0

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1.2k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 4.6 years ago by k.vitting.seerup ▴ 120 • written 4.6 years ago by asmita • 0

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1.3k

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isoform RNA-seq hisat2 stringtie ballgown

3.6 years ago ra711 • 0

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2.2k

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RNASeqData isoform DESeq2

2.0 years ago • updated 23 months ago priyanka.m • 0

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374

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Isoform IsoformSwitchAnalyzeR

11 months ago Craig • 0

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954

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kallisto differential isoform usage isoform

6.5 years ago ilyco • 0

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567

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pacbio isoform

written 17 months ago by lhaiyan3 • 0

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1.1k

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tximport isoform voom

updated 3.8 years ago by Gordon Smyth 50k • written 3.8 years ago by Ina Hoeschele ▴ 620

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1.3k

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isoform deep sequencing voom

updated 3.7 years ago by Gordon Smyth 50k • written 3.7 years ago by Ina Hoeschele ▴ 620

10 results • Page 1 of 1

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Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

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Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

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