Showing : LIMMA • reset
15
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23
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2.0k
views
The difference when using Limma compare between 3 conditions vs 2 conditions
limma
5 weeks ago • updated 8 days ago Chris • 0
14
votes
17
replies
1.2k
views
Why p value inconsistent when using different number of pathway score?
limma
18 days ago • updated 6 days ago Chris • 0
5
votes
9
replies
934
views
Light difference when using coef vs omit a group when compare 3 groups.
limma
27 days ago • updated 20 days ago Chris • 0
5
votes
9
replies
1.3k
views
Batch correction and repeated measures
RUVSeq sva limma
updated 20 days ago by 50k • written 7 months ago by ▴ 10
5
votes
8
replies
8.8k
views
Limma design with continuous and categorical covariates
limma batch effect covariates microarray
updated 15 days ago by • 0 • written 7.7 years ago by ▴ 30
0
votes
7
replies
325
views
Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
21 days ago • updated 15 days ago hortense96 • 0
1
vote
6
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140
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Extremely small p-values using Limma for proteomic data
Proteomics limma
updated 10 hours ago by ★ 3.3k • written 1 day ago by • 0
2
votes
6
replies
410
views
How to make boxplot with pairwise and overall p value from Limma
t.test boxplot limma anova
4 weeks ago • updated 29 days ago Chris • 0
0
votes
4
replies
603
views
How to correct for known and surrogate variables in DESeq2?
DESeq2 BatchEffect sva limma
updated 22 days ago by 42k • written 6 months ago by • 0
3
votes
4
replies
224
views
Help with error using camera() in limma
CAMERA limma
8 days ago • updated 7 days ago Chris • 0
1
vote
3
replies
352
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 23 days ago by 50k • written 28 days ago by • 0
0
votes
3
replies
248
views
Assist me in determining whether the analysis process using the limma package has been executed correctly.
GEOquery ArrayExpress limma DifferentialExpression
updated 8 days ago by 65k • written 9 days ago by • 0
0
votes
3
replies
1.5k
views
Limma, eBayes different sample size of groups and adjustment
limma limma
updated 8 days ago by • 0 • written 13.0 years ago by ▴ 10
1
vote
2
replies
343
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 4 days ago by 50k • written 4 days ago by • 0
2
votes
2
replies
1.1k
views
limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 8 days ago by • 0 • written 7.9 years ago by • 0
0
votes
2
replies
172
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 15 days ago by • 0
0
votes
2
replies
215
views
RNAseq:Technical replicates from different batches
technicalReplicates BatchEffect limma RNASeq
19 days ago • updated 16 days ago catv • 0
3
votes
1
reply
1.5k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 15 hours ago by 50k • written 5.6 years ago by ▴ 10
3
votes
1
reply
180
views
Log-cpm values from limma
limma edgeR RNASeq
updated 19 days ago by 50k • written 20 days ago by • 0
0
votes
1
reply
111
views
Gene-by-sample covariates in limma
Metabolomics limma
updated 5 days ago by 50k • written 6 days ago by • 0
1
vote
1
reply
81
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
updated 1 day ago by 65k • written 1 day ago by • 0
21 results • Page 1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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