Bioconductor Log2FC

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1.3k

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fgsea log2FC

6 months ago • updated 5 months ago V_Vibes • 0

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411

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DESeq2 log2FC vst()

updated 6 months ago by ATpoint ★ 4.6k • written 6 months ago by lifeonmars • 0

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873

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DESeq2 SingleCell log2FC

20 months ago paria.alipour • 0

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2.0k

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DESeq2 Log2FC RNASeqData

2.0 years ago Iwan • 0

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935

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 2.1 years ago by James W. MacDonald 67k • written 2.1 years ago by Laia ▴ 10

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5.7k

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DESeq2 log2FC

2.3 years ago User000 • 0

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1.7k

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log2FC DESeq2 GSEA voom limma

updated 2.5 years ago by Gordon Smyth 52k • written 2.5 years ago by Yang Shi ▴ 10

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2.9k

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edger log2FC

written 5.2 years ago by matteo.buti • 0

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1.5k

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deseq2 log2fc standard error timecourse

updated 6.9 years ago by ellascottgm • 0 • written 6.9 years ago by Verena • 0

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1.6k

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deseq2 log2fc shrinkage

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by aec ▴ 90

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6.1k

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deseq2 L2FC log2fc

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by sup230 ▴ 30

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4.2k

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deseq2 log2fc

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by David R ▴ 90

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2.3k

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deseq2 chipseq counts log2fc error

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by robin.uchiyama • 0

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6.6k

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limma pvalue log2fc log2

updated 2.1 years ago by James W. MacDonald 67k • written 8.8 years ago by serpalma.v ▴ 60

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6.3k

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deseq2 differential gene expression log2fc

8.8 years ago Osvaldo ▴ 40

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2.5k

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deseq2 R log2fc

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by Sushant Pawar • 0

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2.1k

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scan Log2FC

updated 9.5 years ago by Gordon Smyth 52k • written 9.5 years ago by Vani ▴ 20

17 results • Page 1 of 1

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Comment: EuroBioC2023 abstract submission closing soon! by Jeremy • 0

Thanks for the reminder! If you're a Bioconductor user or developer, make sure to [tabs][1] submit your abstract by the deadline, Monday, A…

Comment: Mean variance curve troubleshoot filtering by gingergeiger22 • 0

Gordon, thank for your response. 'filterByExpr()' was marginally better. I can see high variability in samples within the groups from the M…

Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data by rohitsatyam102 ▴ 20

Since I don't know which organism you are working on, I would recommend using the following: `-s 0` if library is unstranded `-C` Discard…

Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data by rohitsatyam102 ▴ 20

Yes use this option. It is recommended for PE and if you don't use it you will observe nearly twice the number of counts in your results. H…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

I edited the previous post. I meant to remove the estimateGLMRobustDisp line in the second snipper : ```` DGE_list_object <- estimateGLMR…

Votes

Comment: Comparing different method for DESEQ2

Answer: How do I fix an odd voom plot in a combined dataset?

Comment: How do I fix an odd voom plot in a combined dataset?

C: How does edgeR cpm function calculate log(CPM) values?

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