Bioconductor Log2FC

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1.2k

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fgsea log2FC

5 months ago • updated 4 months ago V_Vibes • 0

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377

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DESeq2 log2FC vst()

updated 5 months ago by ATpoint ★ 4.6k • written 5 months ago by lifeonmars • 0

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847

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DESeq2 SingleCell log2FC

19 months ago paria.alipour • 0

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1.9k

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DESeq2 Log2FC RNASeqData

23 months ago Iwan • 0

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909

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 24 months ago by James W. MacDonald 67k • written 24 months ago by Laia ▴ 10

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5.5k

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DESeq2 log2FC

2.2 years ago User000 • 0

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1.6k

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log2FC DESeq2 GSEA voom limma

updated 2.4 years ago by Gordon Smyth 52k • written 2.4 years ago by Yang Shi ▴ 10

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2.8k

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edger log2FC

written 5.1 years ago by matteo.buti • 0

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1.5k

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deseq2 log2fc standard error timecourse

updated 6.8 years ago by ellascottgm • 0 • written 6.8 years ago by Verena • 0

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1.5k

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deseq2 log2fc shrinkage

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by aec ▴ 90

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6.0k

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deseq2 L2FC log2fc

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by sup230 ▴ 30

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4.1k

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deseq2 log2fc

updated 8.1 years ago by Michael Love 43k • written 8.1 years ago by David R ▴ 90

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2.2k

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deseq2 chipseq counts log2fc error

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by robin.uchiyama • 0

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6.5k

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limma pvalue log2fc log2

updated 2.0 years ago by James W. MacDonald 67k • written 8.7 years ago by serpalma.v ▴ 60

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6.2k

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deseq2 differential gene expression log2fc

8.7 years ago Osvaldo ▴ 40

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2.5k

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deseq2 R log2fc

updated 9.0 years ago by Michael Love 43k • written 9.0 years ago by Sushant Pawar • 0

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2.0k

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scan Log2FC

updated 9.4 years ago by Gordon Smyth 52k • written 9.4 years ago by Vani ▴ 20

17 results • Page 1 of 1

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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

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Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to Ou, Jianhong ★ 1.3k