Bioconductor Log2FC

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2.3k

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fgsea log2FC

16 months ago • updated 15 months ago V_Vibes • 0

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729

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DESeq2 log2FC vst()

updated 16 months ago by ATpoint ★ 5.0k • written 16 months ago by lifeonmars • 0

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1.1k

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DESeq2 SingleCell log2FC

2.5 years ago paria.alipour • 0

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2.5k

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DESeq2 Log2FC RNASeqData

2.8 years ago Iwan • 0

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1.1k

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 2.9 years ago by James W. MacDonald 68k • written 2.9 years ago by Laia ▴ 10

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6.7k

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DESeq2 log2FC

3.1 years ago User000 • 0

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2.1k

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log2FC DESeq2 GSEA voom limma

updated 3.3 years ago by Gordon Smyth 53k • written 3.3 years ago by Yang Shi ▴ 10

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3.6k

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edger log2FC

written 6.0 years ago by matteo.buti • 0

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1.8k

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deseq2 log2fc standard error timecourse

updated 7.7 years ago by ellascottgm • 0 • written 7.7 years ago by Verena • 0

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1.8k

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deseq2 log2fc shrinkage

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by aec ▴ 90

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6.9k

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deseq2 L2FC log2fc

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by sup230 ▴ 30

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4.5k

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deseq2 log2fc

updated 9.0 years ago by Michael Love 43k • written 9.0 years ago by David R ▴ 90

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2.6k

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deseq2 chipseq counts log2fc error

updated 9.4 years ago by Michael Love 43k • written 9.4 years ago by robin.uchiyama • 0

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7.6k

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limma pvalue log2fc log2

updated 2.9 years ago by James W. MacDonald 68k • written 9.6 years ago by serpalma.v ▴ 60

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6.6k

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deseq2 differential gene expression log2fc

9.6 years ago Osvaldo ▴ 40

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2.6k

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deseq2 R log2fc

updated 9.9 years ago by Michael Love 43k • written 9.9 years ago by Sushant Pawar • 0

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2.4k

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scan Log2FC

updated 10.3 years ago by Gordon Smyth 53k • written 10.3 years ago by Vani ▴ 20

17 results • Page 1 of 1

Recent ...

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Answer: Issue with Soft-Thresholding in WGCNA by misty.chickadee.vckc • 0

Hi Maria, your detailed explanation is super helpful! The NA power estimate in WGCNA can be tricky. I've sometimes seen that when the data …

Comment: Interpretation of output of AffyRNAdeg and hist commands by debasainalsa • 0

When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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