Bioconductor MEDIP-seq

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927

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R medip-seq MEDIPS

2.8 years ago Luomeng • 0

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2.6k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

4.6 years ago • updated 4.5 years ago rtrivedi1 ▴ 10

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2.0k

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MEDIPS MeDIP-seq

updated 4.2 years ago by Lukas ▴ 20 • written 6.1 years ago by lshepard ▴ 40

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1.1k

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medip-seq createset

updated 6.9 years ago by Bioconductor Community 0 • written 7.0 years ago by oussama.badad • 0

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1.4k

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medips medip-seq dna methylation dmr analysis

updated 7.0 years ago by Lukas Chavez ▴ 570 • written 7.0 years ago by mtefit • 0

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1.1k

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medip-seq methylation CpGs

7.1 years ago saripalligautam86 ▴ 10

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2.8k

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medips bsgenome medip-seq

updated 7.7 years ago by Lukas Chavez ▴ 570 • written 7.7 years ago by vjain • 0

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9.3k

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diffbind medip-seq edger deseq2

updated 15 months ago by khanwaled68 • 0 • written 9.7 years ago by florian.noack ▴ 60

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2.6k

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R medips medip-seq

9.3 years ago • updated 8.5 years ago stb • 0

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2.3k

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medips medip-seq error lukas

updated 8.6 years ago by Matthias Lienhard ▴ 280 • written 8.6 years ago by anupriyaverma1408 • 0

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1.6k

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medips medip-seq peak finding luckas

updated 8.6 years ago by Lukas Chavez ▴ 570 • written 8.6 years ago by anupriyaverma1408 • 0

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1.6k

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medips R medip-seq pair-end reads

updated 9.0 years ago by Lukas Chavez ▴ 570 • written 9.0 years ago by stb • 0

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1.5k

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medips medip-seq R pair-end reads

updated 9.2 years ago by Lukas Chavez ▴ 570 • written 9.2 years ago by stb • 0

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1.9k

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R medip-seq medips bwa

updated 9.3 years ago by Lukas Chavez ▴ 570 • written 9.4 years ago by stb • 0

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1.7k

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annotation chippeakanno rattus norvegicus medip-seq

9.8 years ago Vang Le ▴ 80

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Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k