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MEDIP-seq
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0
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766
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How to use MeDIPS with BEDPE format input?
R
medip-seq
MEDIPS
2.1 years ago
Luomeng
• 0
7
votes
9
replies
2.2k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
3.9 years ago • updated 3.8 years ago
rtrivedi1
▴ 10
4
votes
5
replies
1.7k
views
Extracting normalized counts in MEDIPS
MEDIPS
MeDIP-seq
updated 3.5 years ago by
Lukas
▴ 20 • written 5.3 years ago by
lshepard
▴ 40
0
votes
0
replies
931
views
Calculating short read coverage at genome wide windows for create.set- MEDIPS
medip-seq
createset
updated 6.2 years ago by
Bioconductor Community
0 • written 6.3 years ago by
oussama.badad
• 0
1
vote
2
replies
1.2k
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 6.3 years ago by
Lukas Chavez
▴ 570 • written 6.3 years ago by
mtefit
• 0
0
votes
0
replies
1.0k
views
All fragments/sequences captured using MeDIP are methylated?
medip-seq
methylation
CpGs
6.4 years ago
saripalligautam86
▴ 10
1
vote
6
replies
2.3k
views
MEDIP: Problem with MEDIPS.createSet
medips
bsgenome
medip-seq
updated 7.0 years ago by
Lukas Chavez
▴ 570 • written 7.0 years ago by
vjain
• 0
16
votes
12
replies
8.4k
views
Diffbind: edgeR or DESeq2 ?
diffbind
medip-seq
edger
deseq2
updated 6 months ago by
khanwaled68
• 0 • written 9.0 years ago by
florian.noack
▴ 60
0
votes
6
replies
2.3k
views
MeDIPS: warning when using "ttest" settings in MEDIPS.meth
R
medips
medip-seq
8.6 years ago • updated 7.8 years ago
stb
• 0
3
votes
5
replies
2.0k
views
CNV parameter not working - MEDIPS
medips
medip-seq
error
lukas
updated 7.9 years ago by
Matthias Lienhard
▴ 280 • written 7.9 years ago by
anupriyaverma1408
• 0
1
vote
1
reply
1.5k
views
Window size for MEDIPS
medips
medip-seq
peak finding
luckas
updated 7.9 years ago by
Lukas Chavez
▴ 570 • written 7.9 years ago by
anupriyaverma1408
• 0
0
votes
1
reply
1.4k
views
Insertion size when using 'paired' in MEDIPS.createSet()
medips
R
medip-seq
pair-end reads
updated 8.3 years ago by
Lukas Chavez
▴ 570 • written 8.3 years ago by
stb
• 0
0
votes
1
reply
1.3k
views
How does the 'paired' argument works in MeDIPS 1.23.2
medips
medip-seq
R
pair-end reads
updated 8.5 years ago by
Lukas Chavez
▴ 570 • written 8.5 years ago by
stb
• 0
1
vote
1
reply
1.7k
views
MeDIPS and use of the 'bwa' parameter
R
medip-seq
medips
bwa
updated 8.6 years ago by
Lukas Chavez
▴ 570 • written 8.6 years ago by
stb
• 0
0
votes
0
replies
1.5k
views
count overlapping reads for CpG islands and annotate with gene names?
annotation
chippeakanno
rattus norvegicus
medip-seq
9.1 years ago
Vang Le
▴ 80
15 results • Page
1 of 1
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Comment: Ensembl site unresponsive via biomaRt
by
Mike Smith
★ 6.6k
I think this is an unrelated issue. The original post includes the message `Error: 'curl_parse_url' is not an exported object from 'namesp…
Comment: pairedGSEA input files
by
shdam
▴ 10
Hi Sara, Apologies for the slow response! James is exactly right. Both `salmon` and `kallisto` can produce transcript counts, if you map …
Comment: Unused arguments error without used arguments in GSVA?
by
michaelarringtony
• 0
Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/
Comment: EdgeR Biological CVs
by
jeffreestary
• 0
By default, edgeR uses an empirical Bayes approach to shrink gene-wise dispersions toward a trended or [PolyTrack][1] common value, which i…
Comment: How to reverse complement some elements of a DNAStringSet
by
shrill.asp.tufl
• 0
Dealing with DNAStringSet manipulation can be tricky! When selectively reverse complementing sequences, consider how to efficiently retain …
Votes
Comment: Limma comparing gene expression between base line and one treatment
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
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