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Showing :
Mfuzz
•
reset
3
votes
6
replies
530
views
Average biological replicates in RNA-seq
Mfuzz
RNASeq
10 weeks ago
boczniak767
▴ 720
0
votes
0
replies
318
views
Mfuzz package loading issues
Mfuzz
MacBook
loadingissues
6 months ago
Jon
• 0
0
votes
4
replies
657
views
Mfuzz package loading issues
Mfuzz
loadingissues
macbook
6 months ago
Jon
• 0
0
votes
2
replies
787
views
R: problem with running time-series analysis software: Mfuzz
time-series
mfuzz
replace=FALSE
23 months ago
soda
▴ 80
1
vote
1
reply
536
views
Fuzzy C means clustering
Mfuzz
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
syed.imtiazaziz
• 0
0
votes
0
replies
616
views
Mfuzz time-series design
mfuzz
normalization
4.8 years ago
xizhang
• 0
3
votes
9
replies
2.5k
views
DESeq2 Normalized Counts for Mfuzz
deseq2
rnaseq
mfuzz
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
rbenel
▴ 40
0
votes
0
replies
932
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
5.9 years ago
prakashpandey1111
• 0
0
votes
0
replies
650
views
For optimal c and m using fuzzy c-means clustering
mfuzz
5.9 years ago
prakashpandey1111
• 0
1
vote
1
reply
1.3k
views
expression profiles between DESeq2 and Mfuzz
deseq2
mfuzz
differential expression
timecourse
updated 7.6 years ago by
Michael Love
41k • written 7.6 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
2.0k
views
cluster composition in Mfuzz package
cluster
mfuzz
gene names
updated 8.1 years ago by
Assa Yeroslaviz
★ 1.5k • written 8.1 years ago by
thomas.dobrenel
• 0
1
vote
1
reply
5.5k
views
Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz
clustering
bioinformatics
proteomics
timecourse
updated 8.2 years ago by
Laurent Gatto
1.6k • written 8.2 years ago by
under-waterworld
• 0
0
votes
0
replies
1.0k
views
Small bug in mfuzz.plot
Mfuzz
8.3 years ago
musically.ut
• 0
0
votes
0
replies
1.4k
views
mfuzz problems
Clustering
Mfuzz
Clustering
Mfuzz
10.0 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
1.1k
views
[Mfuzz] y-axis values
Clustering
Mfuzz
Clustering
Mfuzz
13.1 years ago
boczniak767
▴ 720
0
votes
2
replies
3.6k
views
[Mfuzz] Error in cmeans(exprs(eset)
Mfuzz
Mfuzz
13.1 years ago
boczniak767
▴ 720
0
votes
1
reply
1.5k
views
Mfuzz plot -pdf
Mfuzz
Mfuzz
updated 15.0 years ago by
James W. MacDonald
65k • written 15.0 years ago by
dorothyc
▴ 140
0
votes
1
reply
1.3k
views
Mfuzz package
Clustering
Mfuzz
Clustering
Mfuzz
updated 15.1 years ago by
James W. MacDonald
65k • written 15.1 years ago by
dorothyc
▴ 140
0
votes
4
replies
6.0k
views
Heatmap without using clustering result
Clustering
Mfuzz
Clustering
Mfuzz
updated 15.2 years ago by
Steve Pederson
▴ 60 • written 15.2 years ago by
gregory voisin
▴ 430
19 results • Page
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Replies
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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