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NCBI
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4
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2.2k
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Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread
ncbi
GRCh38
hg38
updated 7.5 years ago by
Wei Shi
★ 3.6k • written 7.5 years ago by
jan.soderman
• 0
1
vote
5
replies
1.3k
views
Gene Ontology analysis
ontology
edger
limma
ncbi
organism package
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
babak.loghmani
▴ 20
8
votes
7
replies
3.5k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 8.3 years ago by
Hervé Pagès
16k • written 8.3 years ago by
gokcen.eraslan
▴ 10
2
votes
4
replies
1.0k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI
NCBI
SQL
AnnotationForge
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
chefer
• 0
2
votes
5
replies
805
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio
convert
ensembldb
NCBI
6 months ago • updated 5 months ago
j_denton
• 0
2
votes
2
replies
3.2k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray
normalization
ncbi
updated 9.0 years ago by
James W. MacDonald
65k • written 9.0 years ago by
pankajnarula84
▴ 20
2
votes
3
replies
504
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio
cDNA
ensembldb
NCBI
5 months ago
R_Page
• 0
0
votes
0
replies
638
views
getGFFSet function CRASHES R session
getGFF
NCBI
biomartr
biomaRt
2.7 years ago
Matan G.
▴ 60
0
votes
1
reply
1.3k
views
.getNcbiURL returns old NCBI url ?
annotate
ncbi
url
9.4 years ago
reuma
• 0
0
votes
0
replies
1.4k
views
Search SRA based on BioSample Attributes
ncbi
sra
search
8.3 years ago
massacomgrao
• 0
10 results • Page
1 of 1
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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