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NOISeq
•
reset
3
votes
6
replies
1.7k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 2.3 years ago by
Michael Love
41k • written 3.6 years ago by
andreia
▴ 10
0
votes
5
replies
3.7k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 7.0 years ago by
Michael Love
41k • written 7.0 years ago by
glmazzo
▴ 10
0
votes
4
replies
2.0k
views
NOISeq installation error
NOISeq
NOISeq
updated 11.6 years ago by
Sean Davis
21k • written 11.6 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
3
replies
1.5k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
Mau
▴ 50
0
votes
2
replies
913
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 3.4 years ago by
ATpoint
★ 4.1k • written 3.4 years ago by
Themis
• 0
0
votes
2
replies
2.7k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 11.6 years ago by
Dan Tenenbaum
★ 8.2k • written 11.6 years ago by
Guest User
★ 13k
0
votes
1
reply
463
views
Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
Rutuja
• 0
1
vote
1
reply
761
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
23 months ago • updated 22 months ago
Pratibha
▴ 10
0
votes
1
reply
824
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
4.9 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
992
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
6.3 years ago
aokoro
• 0
0
votes
0
replies
1.0k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
11.2 years ago
Guest User
★ 13k
0
votes
0
replies
1.3k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
8.5 years ago
lina.faller
▴ 10
0
votes
0
replies
1.6k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
6.6 years ago
Luiz
• 0
0
votes
0
replies
1.1k
views
NOISeq-real input parameters
NOISeq
NOISeq
12.1 years ago
Guest User
★ 13k
0
votes
0
replies
956
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
6.1 years ago
Aurora
▴ 20
0
votes
0
replies
657
views
NOISeq 'readData' not writing correctly
software error
NOISeq
4.8 years ago
jledmondson
• 0
0
votes
0
replies
683
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
4.7 years ago
ag1805x
▴ 80
17 results • Page
1 of 1
Recent ...
Replies
Comment: Couldn't connect to server while using "pathways"
by
ATpoint
★ 4.1k
Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…
Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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