Bioconductor NanoStringDiff

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1.5k

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limma edgeR DESeq2 NanoStringDiff

updated 2.6 years ago by James W. MacDonald 65k • written 2.6 years ago by reberya • 0

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510

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NanoStringDiff

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by Paraskevi • 0

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867

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NanoStringDiff GLM Gene expression

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by Guillaume Robert • 0

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845

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DESeq2 NanoStringDiff limma

11 months ago pg45863 ▴ 10

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1.9k

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nanostringdiff nanostring NanoStringDiff

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by casey.rimland ▴ 150

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899

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Bioconductor Transcriptomics NanoStringDiff

updated 3.5 years ago by Laurent Gatto 1.6k • written 3.5 years ago by Pedro ▴ 10

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1.4k

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NanoStringDiff

updated 3 months ago by pjanas • 0 • written 5.0 years ago by noelleenright ▴ 10

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974

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Nan NanoStringDiff

2.8 years ago choijamts • 0

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1.9k

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NanoStringDiff NanoString nCounter DE analysis

updated 5 months ago by georgersmith • 0 • written 4.7 years ago by lim6432 ▴ 50

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627

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 15 months ago by James W. MacDonald 65k • written 15 months ago by Aleksandra • 0

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654

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NanoStringDiff

3.1 years ago YM • 0

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1.1k

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NanoStringDiff

4.3 years ago stephen.pollo • 0

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1.3k

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

6.8 years ago c.kohler • 0

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547

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DifferentialExpression NanoStringDiff

2.4 years ago sanrie10 • 0

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819

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NanoStringDiff clusterProfiler fgsea

11 months ago pg45863 ▴ 10

15 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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