Bioconductor NanoStringDiff

Showing : NanoStringDiff • reset

votes

replies

1.4k

views

NanoStringDiff

updated 3 months ago by pjanas • 0 • written 5.0 years ago by noelleenright ▴ 10

votes

replies

1.9k

views

NanoStringDiff NanoString nCounter DE analysis

updated 6 months ago by georgersmith • 0 • written 4.8 years ago by lim6432 ▴ 50

votes

replies

844

views

NanoStringDiff clusterProfiler fgsea

11 months ago pg45863 ▴ 10

votes

replies

858

views

DESeq2 NanoStringDiff limma

11 months ago pg45863 ▴ 10

votes

636

views

GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 15 months ago by James W. MacDonald 65k • written 15 months ago by Aleksandra • 0

votes

replies

513

views

NanoStringDiff

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Paraskevi • 0

votes

replies

552

views

DifferentialExpression NanoStringDiff

2.4 years ago sanrie10 • 0

votes

replies

1.5k

views

limma edgeR DESeq2 NanoStringDiff

updated 2.7 years ago by James W. MacDonald 65k • written 2.7 years ago by reberya • 0

votes

replies

979

views

Nan NanoStringDiff

2.8 years ago choijamts • 0

votes

replies

664

views

NanoStringDiff

3.1 years ago YM • 0

vote

909

views

Bioconductor Transcriptomics NanoStringDiff

updated 3.5 years ago by Laurent Gatto 1.6k • written 3.5 years ago by Pedro ▴ 10

vote

replies

1.1k

views

NanoStringDiff

4.3 years ago stephen.pollo • 0

votes

replies

876

views

NanoStringDiff GLM Gene expression

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by Guillaume Robert • 0

vote

replies

1.9k

views

nanostringdiff nanostring NanoStringDiff

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by casey.rimland ▴ 150

votes

replies

1.3k

views

nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

6.8 years ago c.kohler • 0

15 results • Page 1 of 1

Recent ...

Replies

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Awards • All