Bioconductor Pathway

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4.6k

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pathview KEGGgraph gage pathway pathway analysis

6.8 years ago Luo Weijun ★ 1.6k

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1.5k

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deseq2 pathway ihw

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by guidobarzaghi ▴ 20

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1.8k

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pathview kegg r pathway

4.5 years ago AZ ▴ 30

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668

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pathway ORA limma CAMERA DGE

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by manuelsokolov • 0

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1.1k

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limma pathway

updated 4.8 years ago by mikhael.manurung ▴ 270 • written 4.8 years ago by Dario Strbenac ★ 1.5k

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4.8k

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R ClusterProfiler Enrichment Pathway

updated 11 months ago by Guido Hooiveld ★ 4.0k • written 4.1 years ago by t.b.kuipers • 0

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1.1k

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pathway KEGG annotation annotationhub

updated 4.0 years ago by James W. MacDonald 66k • written 4.0 years ago by Bogdan ▴ 670

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1.4k

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pathway paxtools

9.6 years ago Guido Leoni ▴ 200

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745

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IHW deseq2 Pathway

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by guidobarzaghi ▴ 20

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919

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igraph miR2Pathway Pathway page_rank

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by genomic8328 ▴ 10

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945

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pathway SBGNview Reactome pathview PANTHER

written 3.1 years ago by Luo Weijun ★ 1.6k

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989

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pathway KEGGREST GSEA

updated 3.2 years ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by MOHAMMAD • 0

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789

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kegg pathway pathview

5.2 years ago Ahdee ▴ 50

13 results • Page 1 of 1

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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

Comment: Help with ENmix readidat by minardsmitha ▴ 10

Did you figure this out? I have the same issue.

Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720

Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …

Votes

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

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