Showing : Preprocessing • reset
5
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meta analysis of microarrays of small sample sizes
preprocessing microarray genemeta
updated 7.6 years ago by ▴ 110 • written 7.6 years ago by ▴ 20
5
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5
replies
2.7k
views
Joint Preprocessing of RNA-Seq and Microarray datasets
preprocessing rnaseq microarray
updated 8.4 years ago by 50k • written 8.4 years ago by ▴ 30
4
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6
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604
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filtering lowly expressed reads
RNASeq limma DifferentialExpression Preprocessing
updated 12 weeks ago by 50k • written 3 months ago by • 0
4
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0
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1.7k
views
how to test for genes of interest?
Normalization Preprocessing limma Normalization Preprocessing limma
15.8 years ago Gordon Smyth 50k
3
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2
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3.0k
views
Nanostring ncounterdata - DESeq
RNASeq Normalization Preprocessing DESeq RNASeq Normalization Preprocessing DESeq
updated 12.8 years ago by ★ 3.7k • written 12.8 years ago by ▴ 20
3
votes
9
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1.9k
views
About the best use of frma for several GEO Series
frma normalization preprocessing
updated 7.4 years ago by ▴ 830 • written 7.4 years ago by ▴ 20
2
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2
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1.3k
views
AgilentG4502A_07_2 and AgilentG4502A_07_1
limma read.maimages normalization preprocessing
updated 6.4 years ago by 50k • written 6.4 years ago by ▴ 10
2
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2
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987
views
Preprocessing Issue
sva RNASeq Preprocessing Normalization BatchEffect
updated 3.2 years ago by ★ 4.1k • written 3.2 years ago by • 0
1
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4
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2.6k
views
How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray Preprocessing NimbleGen Normalization
written 17 months ago by • 0
1
vote
6
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2.2k
views
How to process Affymetrix HT HG-U133+ PM Array Plate
affy affymetrix microarrays preprocessing
updated 6.1 years ago by ★ 3.9k • written 6.1 years ago by ▴ 260
1
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1
reply
1.5k
views
Minfi RGChannelSet preprocessing error in assayDataElement
minfi preprocessing error
updated 7.6 years ago by ★ 6.5k • written 7.6 years ago by • 0
1
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0
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1.6k
views
Pre-processing of RNA sequencing data for GSVA
rnaseq rna-seq preprocessing gsva
7.7 years ago t.kuilman ▴ 170
0
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0
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890
views
handling scanalyze output format
Preprocessing convert Preprocessing convert
20.5 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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699
views
option rm.mask=TRUE in ReadAffy
Normalization Preprocessing hu6800 probe Normalization Preprocessing hu6800 probe
20.5 years ago t-kawai@hhc.eisai.co.jp ▴ 50
0
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1
reply
1.2k
views
HTqPCR useful for ChIP data ?
Preprocessing Clustering HTqPCR Preprocessing Clustering HTqPCR
updated 18 months ago by • 0 • written 12.3 years ago by ▴ 10
0
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0
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779
views
short course announcement
Microarray Normalization Preprocessing Classification Clustering Microarray Normalization
20.6 years ago mark@biostat.ucsf.edu ▴ 30
0
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0
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1.1k
views
RE: Bioconductor Digest, Vol 1, Issue 271
Normalization Preprocessing probe affy hexbin Normalization Preprocessing probe affy
21.1 years ago Huang, Cheng-Cheng NIH/NCI ▴ 30
0
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1
reply
2.2k
views
Recurrent error with Flashclust
Normalization Preprocessing probe Normalization Preprocessing probe
updated 13.3 years ago by ★ 3.0k • written 13.3 years ago by ▴ 340
0
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0
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899
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last call for Boston bioc Training, 13-15 july, content revised
Annotation GO Preprocessing Clustering Yeast probe RSNPper biomaRt Annotation GO Yeast
17.8 years ago Vincent J. Carey, Jr. 6.7k
0
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1
reply
1.2k
views
number of Replicates - Fold change vs Limma or Siggenes/SAM
Preprocessing gcrma Preprocessing gcrma
updated 20.0 years ago by ▴ 30 • written 20.0 years ago by ▴ 90
0
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0
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1.1k
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technical replicates (again!): a summary
Microarray GO Preprocessing Cancer vsn Microarray GO Preprocessing Cancer vsn
20.1 years ago Ramon Diaz ★ 1.1k
0
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0
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667
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[BioCTrain] announcement: training option Boston May 2003
Preprocessing Infrastructure oligo Preprocessing Infrastructure oligo
21.2 years ago Vincent Carey ▴ 10
0
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6
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1.8k
views
RMA vs VSN
Preprocessing vsn Preprocessing vsn
19.9 years ago Roger Vallejo ▴ 120
0
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0
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707
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Re: RMA vs VSN
Normalization Preprocessing Cancer probe affy vsn gcrma Normalization Preprocessing probe
19.9 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
966
views
[COURSE] Computational and Statistical Aspects of Microarray Analysis (III)
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
19.4 years ago stefano iacus ▴ 430
0
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0
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792
views
how to check reference quality?
Microarray Preprocessing Survival limma Microarray Preprocessing Survival limma
19.3 years ago Silvano Piazza ▴ 50
0
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0
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1.1k
views
[COURSE REMINDER] Computational and Statistical Aspects of Microarray Analysis
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
19.2 years ago stefano iacus ▴ 430
0
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3
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859
views
suggestion : new object for exprSet
Preprocessing gcrma Preprocessing gcrma
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ★ 1.8k
0
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2
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905
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ANN: Bioconductor short course June 1-3 in Seattle
Preprocessing Visualization Cancer Preprocessing Visualization Cancer
19.1 years ago Seth Falcon ★ 7.4k
0
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0
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794
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Bioc Training: 21-23 July 2005, Boston
Annotation Preprocessing Visualization Annotation Preprocessing Visualization
19.0 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
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1.0k
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Re: trouble installing "affy" package
Annotation GO Preprocessing Biobase affy affyPLM Annotation GO Preprocessing Biobase
20.1 years ago Debjani Bhowmick ▴ 30
0
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0
replies
982
views
RE: Bioconductor Digest, Vol 13, Issue 27
Proteomics Normalization GO Preprocessing Clustering moe430a moe430b cdf probe affy GO
20.2 years ago Victor M Trevino-Alvarado ▴ 20
0
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0
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1.0k
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Bioconductor 1.1 Released
Preprocessing Cancer graph Preprocessing Cancer graph
21.5 years ago Jeff Gentry ★ 3.9k
0
votes
0
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764
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dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Microarray Normalization Preprocessing Cancer hgu133plus2 probe affy limma PROcess Cancer
17.3 years ago Henrik Bengtsson ★ 2.4k
0
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0
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1.1k
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Courses in Practical DNA Microarray Analysis 2006
Microarray Genetics Pathways Preprocessing Classification Cancer Microarray Genetics
18.4 years ago Wolfgang Huber ★ 13k
0
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0
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582
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preprocessing separately from each other
Preprocessing Preprocessing
18.6 years ago Mohammad Esad-Djou ▴ 520
0
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1
reply
1.0k
views
questions about Affy package from new user
Proteomics Normalization GO Preprocessing Clustering probe affy PROcess mscalib GO probe
updated 20.2 years ago by 65k • written 20.2 years ago by ▴ 210
0
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0
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813
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Wrapper of X-tandem into BioC for Proteomics
Preprocessing Preprocessing
18.7 years ago Simon Lin ▴ 210
0
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1
reply
913
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compare expression measures (and AffyComp)
Preprocessing affycomp Preprocessing affycomp
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 520
0
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1
reply
1.1k
views
GCRMA
Microarray Preprocessing gcrma BRAIN Microarray Preprocessing gcrma BRAIN
updated 18.3 years ago by ★ 2.0k • written 18.3 years ago by ▴ 20
0
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0
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1.1k
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COURSE: Computational and Statistical Aspects of Microarray Analysis (IV)
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
18.3 years ago stefano iacus ▴ 430
0
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3
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1.0k
views
ad hoc tools for affy tiling arrays?
Normalization Preprocessing gcrma Normalization Preprocessing gcrma
updated 18.3 years ago by ▴ 310 • written 18.3 years ago by ★ 6.5k
0
votes
0
replies
787
views
ANN: Introductory R and Bioconductor Mini Course , Seattle, April 12-14
Microarray Annotation Preprocessing Cancer Microarray Annotation Preprocessing Cancer
18.2 years ago Nianhua Li ▴ 870
0
votes
3
replies
2.6k
views
Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
18.2 years ago McGee, Monnie ▴ 300
0
votes
0
replies
1.0k
views
[COURSE] CSAMA'06, few places available
Microarray Proteomics Preprocessing Cancer Microarray Proteomics Preprocessing Cancer
18.0 years ago stefano iacus ▴ 430
0
votes
0
replies
579
views
How to create a MAList or ExprSet object from a matrix
Normalization Preprocessing probe Category Normalization Preprocessing probe Category
17.7 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
680
views
tasks of Background Correction and PM Corr =?iso-8859-15?q?ection_in_Prepro
Microarray Preprocessing probe Microarray Preprocessing probe
17.5 years ago Johannes Freudenberg ▴ 30
0
votes
0
replies
637
views
tasks of Background Correction and PM Correction in Preprocessing methods
Preprocessing Preprocessing
17.5 years ago Mohammad Esad-Djou ▴ 520
0
votes
0
replies
631
views
tasks of Background Correction and PM Correction in Preprocessing methods
Preprocessing Cancer Preprocessing Cancer
17.5 years ago Alvord, Greg DMS [Contr] ▴ 160
0
votes
3
replies
1.2k
views
LIMMA No residual using rmaPLM
Preprocessing affyPLM Preprocessing affyPLM
updated 18.7 years ago by 50k • written 18.7 years ago by ▴ 270
50 results • Page 1 of 1
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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