Bioconductor Prostar

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Prostar

4.0 years ago benoit.marchand • 0

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Prostar

updated 3.7 years ago by Wang • 0 • written 4.1 years ago by benoit.marchand • 0

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prostar proteomics

7.6 years ago laural710 • 0

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prostar proteomics rforproteomics annotationforge

updated 7.6 years ago by Samuel Wieczorek ▴ 10 • written 7.7 years ago by lolli.langan ▴ 20

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Prostar Dapar clusterprofiler

updated 7.7 years ago by Samuel Wieczorek ▴ 10 • written 7.7 years ago by laural710 • 0

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install error package installation DAPAR prostar R version 3.4.4

7.8 years ago rita.reig • 0

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Prostar

updated 8.2 years ago by Samuel Wieczorek ▴ 10 • written 9.3 years ago by kamal.fartiyal84 ▴ 10

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Prostar DAPAR software error

updated 8.2 years ago by Samuel Wieczorek ▴ 10 • written 8.3 years ago by van.theodorakis • 0

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…

Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0

Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…

Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

Aaron Lun was a PhD student in my Lab back in 2015, when he posted the answers about allele-specific expression that you and Mike Love have…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You just need the mouse identifier (controls baseline) and the group specific allelic effect.

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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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