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QualityControl
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0
votes
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replies
949
views
getsex function error.
QualityControl
methylationArrayAnalysis
2.3 years ago
zusman
• 0
0
votes
1
reply
1.0k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 3.3 years ago by
Michael Stadler
▴ 350 • written 3.3 years ago by
h.kozlowski
• 0
0
votes
0
replies
613
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
3.4 years ago
bastien_chassagnol
• 0
0
votes
2
replies
1.4k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
n.lu
• 0
3
votes
2
replies
917
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 7.2 years ago by
Mike Smith
★ 6.5k • written 7.2 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
1.0k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.2 years ago
chelsey.ju
• 0
2
votes
0
replies
1.1k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
7.6 years ago
Bouzid.a
▴ 20
1
vote
14
replies
3.7k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 8.0 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.0 years ago by
Lna
• 0
2
votes
2
replies
1.5k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 8.4 years ago by
Diego Diez
▴ 760 • written 8.4 years ago by
jacorvar
▴ 40
4
votes
2
replies
2.4k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 8.5 years ago by
Matthew McCormack
▴ 180 • written 8.5 years ago by
NS
▴ 60
1
vote
2
replies
1.7k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 9.4 years ago by
Gordon Smyth
50k • written 9.4 years ago by
alakatos
▴ 130
0
votes
1
reply
1.2k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
17.0 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
Recent ...
Replies
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Guido Hooiveld
★ 4.0k
FWIW: based on [previous posts][1] it is suggested to install like this: install.packages(pkgs="./org.Vdahliae.eg.db", repos=NULL, typ…
Votes
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
Answer: How to design DEXSeq formula for multiple variables
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