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Showing :
RBGL
•
reset
0
votes
0
replies
521
views
Removing edges from a complete graph to make it a planar maximally filtered graph
RBGL
2.2 years ago
jackson0696
• 0
2
votes
4
replies
4.6k
views
Unable to upload an App in shinyapps.io with bioconductor packages
shinny
graph
RBGL
updated 13 months ago by
Hamid
▴ 10 • written 3.2 years ago by
Xavier-Andoni
• 0
1
vote
2
replies
848
views
Unable to install RBGL in Bioconductor 3.10 release
rbgl
bh
updated 4.5 years ago by
Martin Morgan
25k • written 4.5 years ago by
Michael Steinbaugh
▴ 90
2
votes
4
replies
1.9k
views
Problems installing RBGL in R
rbgl
r package problem
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
ngs06
▴ 20
1
vote
4
replies
1.2k
views
Non-Redundant Edges in Connected Components
RBGL
updated 5.9 years ago by
Hervé Pagès
16k • written 5.9 years ago by
Dario Strbenac
★ 1.5k
2
votes
11
replies
2.1k
views
RBGL installation error
rbgl
8.0 years ago
Julian Gehring
★ 1.3k
3
votes
2
replies
2.5k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna
rbgl
graph
coexpression
hub genes
updated 8.1 years ago by
Peter Langfelder
★ 3.0k • written 8.1 years ago by
Alan Smith
▴ 150
0
votes
1
reply
1.0k
views
Problem installing RBGL
rbgl
boost
8.1 years ago
tzintzuni
• 0
1
vote
1
reply
2.0k
views
Installation error RBGL 1.42
software error
installation
RBGL
compilation error
linux cluster
9.2 years ago
agroff
• 0
0
votes
6
replies
3.6k
views
Directed MST (Edmond's Algorithm)
GO
graph
RBGL
GO
graph
RBGL
updated 10.5 years ago by
Steve Lianoglou
★ 13k • written 10.5 years ago by
Forst, Christian
▴ 90
0
votes
2
replies
1.2k
views
Issues while installing RBGL package
RBGL
RBGL
updated 11.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.2 years ago by
jason tyler
▴ 10
0
votes
0
replies
997
views
changes to RBGL
graph
RBGL
graph
RBGL
11.9 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
5
replies
2.0k
views
'citation("RBGL")' command produces package not found error
RBGL
RBGL
updated 12.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.0 years ago by
Jeremiah Willcock
▴ 30
0
votes
1
reply
1.6k
views
deprecated head file for RBGL and compilation failure
graph
RBGL
PROcess
graph
RBGL
PROcess
updated 12.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.1 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
CRAN packages maintained by you
hexbin
gpls
RBGL
impute
Icens
hopach
maanova
RLMM
CORREP
cycle
hexbin
gpls
RBGL
Icens
updated 12.5 years ago by
Nicholas Lewin-Koh
▴ 430 • written 12.5 years ago by
Kurt Hornik
▴ 10
0
votes
3
replies
1.7k
views
RBGL fails to compile / install
RBGL
GOstats
RBGL
GOstats
updated 14.3 years ago by
Seth Falcon
★ 7.4k • written 14.3 years ago by
Groot, Philip de
▴ 630
0
votes
4
replies
1.8k
views
problem on install package RBGL
RBGL
RBGL
updated 14.5 years ago by
Li.Long@isb-sib.ch
▴ 510 • written 14.5 years ago by
LIYUN
▴ 60
0
votes
0
replies
1.1k
views
Problem installing RBGL 1.20.0 using Fedora 11 x64 and gcc 4.4.1
RBGL
RBGL
14.7 years ago
Philipp Antczak
▴ 10
0
votes
4
replies
1.5k
views
RBGL installation issues
RBGL
GOstats
RBGL
GOstats
updated 15.6 years ago by
Li.Long@isb-sib.ch
▴ 510 • written 15.6 years ago by
Iain Gallagher
▴ 930
0
votes
0
replies
1.1k
views
affycoretools vennSelect problem
Annotation
GO
Survival
probe
annotate
genefilter
affy
graph
limma
gcrma
annaffy
RBGL
15.9 years ago
Nick Henriquez
▴ 20
0
votes
6
replies
2.0k
views
Problems building RBGL package
RBGL
RBGL
15.9 years ago
Rasmus Ory Nielsen
▴ 50
0
votes
2
replies
1.2k
views
affycoretools vennSelect problem
GO
Survival
annotate
genefilter
affy
graph
gcrma
annaffy
RBGL
GOstats
biomaRt
affyio
updated 15.9 years ago by
James W. MacDonald
65k • written 15.9 years ago by
PeadarÓGaora
▴ 30
0
votes
0
replies
945
views
Problems with k-cliq definition and calculations using RBGL package
Proteomics
graph
RBGL
Proteomics
graph
RBGL
16.5 years ago
Chanchal Kumar
▴ 130
0
votes
14
replies
2.5k
views
GOStats/RBGL installation error
RBGL
GOstats
RBGL
GOstats
updated 16.5 years ago by
Yongde Bao
▴ 170 • written 16.5 years ago by
Nicolas Servant
▴ 260
0
votes
3
replies
2.0k
views
hyperGTest, KEGG
Annotation
Pathways
multtest
siggenes
RBGL
GOstats
Annotation
Pathways
multtest
siggenes
updated 17.1 years ago by
Seth Falcon
★ 7.4k • written 17.1 years ago by
ivan.borozan@utoronto.ca
▴ 80
0
votes
0
replies
1.2k
views
RBGL: bfs & dfs with directed graphs
GO
Biobase
annotate
geneplotter
graph
Rgraphviz
annaffy
RBGL
convert
GO
Biobase
graph
17.1 years ago
stephen edwards
▴ 10
0
votes
0
replies
1.1k
views
affy u133x3p chip
Microarray
Genetics
GO
Preprocessing
Cancer
CGH
cdf
probe
annotate
genefilter
affy
RBGL
17.1 years ago
Dick Beyer
★ 1.4k
0
votes
2
replies
1.6k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO
Survival
Biobase
genefilter
affy
limma
RBGL
GOstats
Category
affyio
affycoretools
GO
17.2 years ago
Mark W Kimpel
▴ 830
0
votes
1
reply
1.1k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation
GO
cdf
DynDoc
genefilter
tkWidgets
affy
graph
limma
RBGL
biomaRt
Category
updated 17.2 years ago by
James W. MacDonald
65k • written 17.2 years ago by
Scott Ochsner
▴ 300
0
votes
4
replies
1.4k
views
error with AffyQCReport
cdf
annotate
affy
limma
RBGL
simpleaffy
GOstats
affyQCReport
cdf
annotate
affy
limma
updated 17.3 years ago by
Wolfgang Huber
★ 13k • written 17.3 years ago by
Mark W Kimpel
▴ 830
0
votes
6
replies
1.6k
views
GOstats and custom annotation problem
Annotation
GO
annotate
genefilter
graph
AnnBuilder
RBGL
GOstats
Category
Annotation
GO
updated 17.3 years ago by
Sean Davis
21k • written 17.3 years ago by
Dario Greco
▴ 310
0
votes
2
replies
1.6k
views
problem with hist.default in affystart in package affycoretools
GO
cdf
annotate
affy
limma
RBGL
simpleaffy
GOstats
Category
affyQCReport
affyio
GO
cdf
updated 17.4 years ago by
James W. MacDonald
65k • written 17.4 years ago by
Kimpel, Mark W
▴ 890
0
votes
11
replies
2.7k
views
trouble hacking plotPCA
GO
Survival
Biobase
genefilter
affy
affydata
graph
limma
gcrma
matchprobes
affyPLM
RBGL
updated 17.4 years ago by
Rustici, Gabriella NIH/NCI [F]
▴ 10 • written 17.4 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
837
views
RBGL installation on Ubuntu 6.10
RBGL
RBGL
17.4 years ago
lgautier@altern.org
▴ 950
0
votes
5
replies
1.5k
views
error coercing an exprSet to ExpressionSet
GO
cdf
Biobase
annotate
multtest
affy
limma
RBGL
GOstats
Category
affycoretools
GO
cdf
updated 17.5 years ago by
Seth Falcon
★ 7.4k • written 17.5 years ago by
Kimpel, Mark W
▴ 890
0
votes
3
replies
2.0k
views
Situation of the legend in the plotPCA of the affycoretools library
GO
Survival
cdf
annotate
genefilter
multtest
affy
graph
limma
RBGL
GOstats
Category
GO
updated 17.6 years ago by
James W. MacDonald
65k • written 17.6 years ago by
Jordi Altirriba Gutiérrez
▴ 350
0
votes
2
replies
1.0k
views
error with GOHyperG
drosophila2
cdf
Biobase
annotate
genefilter
multtest
RBGL
GOstats
drosophila2
cdf
RBGL
updated 17.7 years ago by
Seth Falcon
★ 7.4k • written 17.7 years ago by
Tony Long
▴ 10
0
votes
1
reply
1.3k
views
[R] problem loading affycoretools - solved!
Biobase
Ruuid
genefilter
multtest
graph
limma
gcrma
matchprobes
affyPLM
RBGL
simpleaffy
updated 17.7 years ago by
Seth Falcon
★ 7.4k • written 17.7 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
1.1k
views
blocking in limma gives an estimability problem
GO
hgu95av2
Ruuid
multtest
affy
graph
limma
RBGL
qvalue
Category
affyio
GO
hgu95av2
17.9 years ago
Pedro López Romero
▴ 360
0
votes
2
replies
1.3k
views
problem with latest version of graph
GO
annotate
genefilter
multtest
affy
graph
Rgraphviz
RBGL
GOstats
affyio
affycoretools
17.9 years ago
Kimpel, Mark W
▴ 890
0
votes
0
replies
748
views
R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
graph
RBGL
graph
RBGL
17.9 years ago
Li.Long@isb-sib.ch
▴ 510
0
votes
14
replies
2.7k
views
RBGL 1.8.1 installation error on linux
Cancer
graph
RBGL
Cancer
graph
RBGL
updated 17.9 years ago by
Li.Long@isb-sib.ch
▴ 510 • written 18.0 years ago by
Johannes Rainer
▴ 300
0
votes
0
replies
999
views
RBGL, shortest paths, edge weights, and the new graph class
SystemsBiology
graph
RBGL
SystemsBiology
graph
RBGL
18.0 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
744
views
johnson.all.pairs.sp (RBGL) causes R to hang with certain graphs
graph
RBGL
graph
RBGL
updated 18.0 years ago by
Dan Bebber
▴ 50 • written 18.0 years ago by
Seth Falcon
★ 7.4k
0
votes
1
reply
866
views
RBGL package
RBGL
RBGL
updated 18.0 years ago by
Seth Falcon
★ 7.4k • written 18.1 years ago by
Jing Su
▴ 10
0
votes
0
replies
661
views
Graph Layout
graph
RBGL
graph
RBGL
18.3 years ago
Li Long
▴ 120
0
votes
1
reply
895
views
rbind in annaffy problem
GO
hgu95av2
rat2302
cdf
annotate
affy
graph
annaffy
RBGL
GOstats
biomaRt
GO
hgu95av2
updated 18.4 years ago by
James W. MacDonald
65k • written 18.4 years ago by
Kimpel, Mark W
▴ 890
0
votes
0
replies
1.1k
views
UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation
GO
Cancer
hgu95av2
hu6800
probe
annotate
affy
graph
RBGL
GOstats
Annotation
18.6 years ago
Shi, Tao
▴ 720
0
votes
6
replies
1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO
Survival
hgu95av2
mgu74av2
Ruuid
annotate
multtest
affy
graph
annaffy
RBGL
GOstats
updated 18.9 years ago by
Seth Falcon
★ 7.4k • written 18.9 years ago by
Dick Beyer
★ 1.4k
0
votes
2
replies
1.3k
views
pathway analysis package
RBGL
KEGGSOAP
RBGL
KEGGSOAP
updated 19.4 years ago by
Sean Davis
21k • written 19.4 years ago by
Josephine.Liang@uchsc.edu
▴ 60
50 results • Page
1 of 1
Recent ...
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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