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RMarkdown
•
reset
10
votes
3
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3.1k
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News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
6.7 years ago
Andrzej Oleś
▴ 750
6
votes
1
reply
3.2k
views
Tutorial:
BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle
Rmarkdown
Tutorial
6.8 years ago
Wolfgang Huber
★ 13k
3
votes
2
replies
1.7k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools
rmarkdown
updated 6.9 years ago by
Andrzej Oleś
▴ 750 • written 6.9 years ago by
Leonardo Collado Torres
★ 1.0k
3
votes
3
replies
2.0k
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown
suppressWarning
warning
updated 14 months ago by
Mike Smith
★ 6.5k • written 2.4 years ago by
Wolfgang Huber
★ 13k
3
votes
3
replies
16k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
7.6 years ago
Jon Bråte
▴ 250
1
vote
2
replies
1.4k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 4.7 years ago by
Erik Wright
▴ 150 • written 4.7 years ago by
lauren.fitch
• 0
1
vote
1
reply
1.1k
views
Best practices for sharing RMarkdown-based supplemental PDFs?
rmarkdown
knitr
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
Keith Hughitt
▴ 180
1
vote
1
reply
1.1k
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools
RNA-Seq
RMarkdown
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
anthony.nash
▴ 20
0
votes
2
replies
3.6k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
6.5 years ago
clarisbaby
• 0
0
votes
2
replies
3.4k
views
installation of package 'rmarkdown' had non-zero exit status
rmarkdown
package updates
updated 7.7 years ago by
James W. MacDonald
65k • written 7.7 years ago by
tarek.mohamed
▴ 10
0
votes
0
replies
617
views
Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools
rmarkdown
3.9 years ago
helucro
▴ 70
11 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0
by
James W. MacDonald
65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
fatinataly
• 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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★ 5.2k
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