Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RUVNormalize
•
reset
1
vote
0
replies
626
views
RUVg spike-in assumption global expression
RUVSeq
RUVnormalize
17 months ago
Erdi
▴ 10
0
votes
0
replies
550
views
determine k during RUVSeq
RUVSeq
RUVnormalize
19 months ago
Ειρήνη
• 0
1
vote
2
replies
1.5k
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
2.7 years ago
AZ
▴ 30
0
votes
4
replies
3.7k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
3.5 years ago
Mohamed
▴ 30
0
votes
1
reply
892
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
7.2 years ago
losik
• 0
0
votes
2
replies
1.5k
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 7.9 years ago by
Dario Strbenac
★ 1.6k • written 7.9 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
3.6k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 8.4 years ago by
davide risso
▴ 980 • written 8.4 years ago by
Nik Tuzov
▴ 90
1
vote
3
replies
3.3k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
8.4 years ago
Nik Tuzov
▴ 90
2
votes
1
reply
1.7k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 8.5 years ago by
davide risso
▴ 980 • written 8.5 years ago by
manish20072013
• 0
2
votes
1
reply
2.2k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
9.4 years ago
anthonycolombo60
• 0
2
votes
6
replies
2.1k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
9.7 years ago • updated 9.6 years ago
thomas.wolfe
• 0
0
votes
0
replies
1.7k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
10.0 years ago
thomas.wolfe
• 0
1
vote
1
reply
1.7k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 10.5 years ago by
laurent.jacob
▴ 10 • written 10.5 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.6k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 10.5 years ago by
laurent.jacob
▴ 10 • written 10.6 years ago by
Dario Strbenac
★ 1.6k
14 results • Page
1 of 1
Recent ...
Replies
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards
• All
Popular Question
to
Istvan Albert
▴ 50
Popular Question
to
Dario Strbenac
★ 1.6k
Scholar
to
Nikos Ignatiadis
▴ 180
Popular Question
to
Robert
• 0
Popular Question
to
lamia11me
• 0
Locations
• All
United States,
5 minutes ago
United States,
16 minutes ago
Italy,
26 minutes ago
Japan,
32 minutes ago
Germany,
43 minutes ago
Traffic: 1841 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6