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RUVnormalize
•
reset
1
vote
2
replies
787
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
11 months ago
AZ
▴ 30
0
votes
4
replies
2.0k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
21 months ago
Mohamed
▴ 30
0
votes
1
reply
600
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
5.4 years ago
losik
• 0
0
votes
2
replies
970
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 6.2 years ago by
Dario Strbenac
★ 1.5k • written 6.2 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
2.5k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.6 years ago by
davide risso
▴ 950 • written 6.6 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.2k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.7 years ago
Nik Tuzov
▴ 80
2
votes
1
reply
1.3k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 6.8 years ago by
davide risso
▴ 950 • written 6.8 years ago by
manish20072013
• 0
2
votes
1
reply
1.5k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
7.7 years ago
anthonycolombo60
• 0
2
votes
6
replies
1.4k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
7.9 years ago
thomas.wolfe
• 0
0
votes
0
replies
1.3k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
8.3 years ago
thomas.wolfe
• 0
1
vote
1
reply
1.2k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 8.7 years ago by
laurent.jacob
▴ 10 • written 8.8 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.2k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 8.7 years ago by
laurent.jacob
▴ 10 • written 8.8 years ago by
Dario Strbenac
★ 1.5k
12 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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