Showing : RangedSummarizedExperiment • reset
0
votes
3
replies
3.5k
views
Converstion of Ranged Summarized Experiment to Data Frame
SummarizedExperiment RangedSummarizedExperiment
updated 4.1 years ago by ▴ 830 • written 4.1 years ago by • 0
0
votes
1
reply
793
views
SummarizedExperiment filter transcript
RangedSummarizedExperiment
4.2 years ago georgina.fqw ▴ 10
3
votes
4
replies
1.6k
views
What assays are distributed with Recount TX data
recount recount2 RangedSummarizedExperiment
updated 5.2 years ago by ★ 1.1k • written 6.0 years ago by ▴ 120
1
vote
2
replies
1.4k
views
Extending SummarizedExperiment without rowRanges argument
summarizedexperiment rangedsummarizedexperiment
updated 6.0 years ago by 25k • written 6.0 years ago by • 0
1
vote
3
replies
1.9k
views
Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
6.1 years ago s.w.vanderlaan ▴ 30
1
vote
1
reply
1.2k
views
subsets different type of data together
R multiassayexperiment rangedsummarizedexperiment summarizedexperiment
updated 6.4 years ago by ★ 1.1k • written 6.4 years ago by ▴ 160
1
vote
6
replies
1.8k
views
deconvole counts per feature from summerizedOverlaps with GRangesLists
summarizeoverlaps rangedsummarizedexperiment grangeslist summarizedexperiment
6.6 years ago cosmin • 0
0
votes
2
replies
1.5k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 6.7 years ago by ▴ 160 • written 6.7 years ago by • 0
2
votes
2
replies
1.5k
views
Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment packages granges iranges
updated 6.9 years ago by ★ 28k • written 6.9 years ago by ▴ 60
3
votes
3
replies
1.7k
views
How to construct an up-to-date and annotation-rich RangeSummarizedExperiment object around old microarray data?
geoquery summarizedexperiment rangedsummarizedexperiment
updated 7.0 years ago by 21k • written 7.0 years ago by ▴ 100
0
votes
4
replies
2.7k
views
RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
rangedsummarizedexperiment deseqdatasetfrommatrix deseq2 tximport
7.1 years ago lirongrossmann ▴ 80
0
votes
1
reply
1.7k
views
Error invalid class "SummarizedExperiment" when using library("MultiDataSet")
summarizedexperiment rangedsummarizedexperiment multidataset
7.2 years ago s.w.vanderlaan ▴ 30
0
votes
5
replies
3.1k
views
Load saved RangedSummarizedExperiment as Deseq2 dataset
deseq2 hdf5 rangedsummarizedexperiment rnaseq
7.3 years ago Jakob Petereit • 0
1
vote
2
replies
1.4k
views
rowRanges in Summarized Experiment changes counts
deseq2 summarizedexperiment rangedsummarizedexperiment rnaseq
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 10
0
votes
3
replies
1.8k
views
genes symbol in RangedSummarizedExperiment object and add GRangesList to DESeqDataSet object in DESeq2
deseq2 rangedsummarizedexperiment grangeslist
7.7 years ago • updated 7.6 years ago layal8785 • 0
4
votes
3
replies
3.1k
views
Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps rnaseq bplapply rangedsummarizedexperiment read counting
8.4 years ago ErickF ▴ 40
0
votes
5
replies
1.8k
views
how to annotate GenomicRanges objects with genome build
grangeslist rangedsummarizedexperiment parathyroidSE genomicranges granges
8.7 years ago Levi Waldron ★ 1.1k
17 results • Page 1 of 1
Recent ...
Replies
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Thank you!
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
Awards • All
Teacher to Gordon Smyth 51k
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to shepherl 4.1k
Supporter to Paul Harrison ▴ 100
Popular Question to Mikhail Dozmorov ▴ 30
Locations • All
Türkiye, 1 minute ago
WEHI, Melbourne, Australia, 1 minute ago
United States, 13 minutes ago
France, 22 minutes ago
United States, 33 minutes ago
Traffic: 641 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6